Nign027668.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- L
- Assembly
- GCA_029203775.1
- Location
- CP092097.1:28048-36728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00027 0.022 16.0 1.6 1 23 83 105 83 105 0.98 2 20 0.21 17 6.9 5.6 1 23 111 133 111 133 0.98 3 20 2.6e-06 0.00021 22.4 3.8 1 23 139 161 139 161 0.99 4 20 0.0012 0.095 14.0 0.3 1 23 167 189 167 189 0.97 5 20 0.46 37 5.9 3.3 2 23 248 270 247 270 0.95 6 20 4.1 3.4e+02 2.8 0.3 9 23 314 329 306 329 0.84 7 20 0.0014 0.11 13.8 3.1 1 23 375 398 375 398 0.96 8 20 4.5 3.7e+02 2.7 2.5 3 19 410 426 408 431 0.88 9 20 0.14 11 7.5 0.2 1 23 494 516 494 516 0.95 10 20 9.7e-06 0.00078 20.6 1.1 2 23 546 567 545 567 0.97 11 20 1.1e-05 0.00085 20.4 0.2 1 23 575 598 575 598 0.95 12 20 0.089 7.2 8.1 0.2 1 23 603 626 603 626 0.92 13 20 0.014 1.1 10.6 3.8 1 23 703 726 703 726 0.95 14 20 1.4 1.1e+02 4.4 0.6 2 23 775 797 774 798 0.93 15 20 0.0042 0.34 12.3 4.5 2 23 811 832 810 832 0.96 16 20 3.3 2.7e+02 3.2 1.7 2 23 872 893 872 893 0.94 17 20 8.5 6.9e+02 1.9 1.0 1 12 948 959 948 962 0.87 18 20 0.015 1.2 10.5 2.5 1 23 1021 1043 1021 1043 0.98 19 20 0.13 10 7.6 1.5 1 23 1051 1073 1051 1073 0.96 20 20 0.0063 0.51 11.7 0.1 1 23 1081 1103 1081 1103 0.98
Sequence Information
- Coding Sequence
- ATGATGTTATTCAAAGGGAACAGTAGCCGTTTAGAATTATTAATCGGCAAAATACAAGCGACTAAAGAACATGTTACTCCACGTGATATCAAAGATGTTCTTGGCACTGAAGCGGGAAGTAGTTGGCGTAGTGATACGCCGGATGGACCAGCAACACCGTGTTCGAGTGTCGCTACGCCGACGCCAAGCTCCGGAGGCGATGATTCGGAGCTGGCGTTTACAGTCGGCGCTACAGATACAACACCGTACGCGTGTCAGTTCTGTAGAAAAGCGTTTCCGAGACTCAACTACCTCAAGAAACATGAACAAACACACAGCGATCAAATGCCATTTCAATGTGAATTTTGTTCAAGACTTTTCAAGCATAAAAGATCAAGGGACCGTCATATTAAACTTCATACAGGtgataaaaaatacagatgTTCTCACTGCGAAGCGGCGTTTTCAAgaagCGATCACTTAAAAATCCATTTACGAACTCACGACAATGGGAAACCGTTTCAATGTATTGTATGTAATCGTGGATATAATACGTCAGCGGCATTAACATCTCACATGCAAAGTCATAAAAAGCAACAGCAACAGCAGAAGACTCAACAGCAACAAGTACATGAAAATCAACAGcaacaatatgaaatattatctgGAACTCGGACAGTTACAAATGTGGAAATTACATCCGAACATACTCCTCGACCATGTAGCACGGAAGATAATAGAACTAGTTCGCAATCTTCACTTTATTGTTATCAGTGTTCAAatagttttcataaaattgacgAGTTACAGAATCATATCGCAACTTGTCATAAAGTGGATTTGACTCCGTCACCAGTTGTTAATATGAATGAAGTGATAGTACCGTCTCCCAGTGAACAAAGTTATGTGGAAAAAATTTCGTACAGTCCAAAATTAGCTTGTATGTATTGCACTCAAGATAGTTTTACAACAATGGAGGAATTACAGTCGCACGTTCAGTCAACACACAAATCGATACTGAATGGAGATTTGCCTGAATTCTCATCGTCGAGAAAACTACCTTATATAAAAACGTCGTCGTCTCCTACGATCTATTCATCGATTTCCCAATTTAAAAGCGCTTCGTCGCCGAGTCATTTCCAACACCAATGTGACCTTTGTACAATGCGTTTCAGTTcgtttcaaaatttacaaatacacaTGTTTAGTTCGCACAGATACAGTAGTGTTCTACCACAAGCGATATGTTGTCCGTATTGTTCACTTCCGTTTCATACTGCCGAAATGTTCGCTGAACATTGTGCACGCGTTCATCGGACGAAGAACAATTCGTTATCTTTACAACCCGAACAAGTGAAACCGACGGACTTGACGAAAAAATCGTCGGACGATCGAAGTACAAAACGATTGAAGAAAACCGCCGACTCGCACGTCGACACGACGCCGGCTTCGTCGTCGTCATCGACGCCGACGAACATACAGTACGAGCACATCGGAACTTATTTGTGCAATCAGTGCGATGCGGCTTTACCGGATTTCGAATCGTTTCGGTCGCATCTCAAATTACATATCGAACAAACGGACGGATCGaggaataataatttacatgacCATAGAAATATGATTTTCGATATGTTGAAGGAATCGGTTATGTTACCATGTCCGCATTGTAATCAAACGTTCGGAGATCCTGCATCACTCGAAAGGCATCTCTGTACACATTTCTTCACTACAATTACGGAATATGTATGTAGAAATTGTTCGAAAACATTTCCAACGCCCGACGAATTACAGAAACACTTGATGGATATACACGCTCATCATTTGTACAGATGTTCGTTGTGTAGAGAAATGTTTGATTCGAAAGTGGCAATTCAGattCATTTCGCAGTAAAGCATAGTAGTGAATGTCAAATGCTTCGTTGTCTTGTTTGTCCATCGAACACTCGTTCAACGTTTCGTAACGAGAAAGCTGGTAAAATGCATATACGTGCAAATCACGAAAACAGTTGGATAATGCCTCCGCCACTGTCGAcgcataataaattattaagatgTCATTTTTGTATAGCTGAATTTGAAACTGACATTGAAATGCAGCTTCATCTTACTATGCATATTCAACCATTCAAGTGTAGCATATGTCACAAGACGTTCGAAGTTGAATATTTATTGGAATGTCACATGCAAGAGAACCATGATACGAACAAGGCGACAACGAACGGTTCAAACGATTTAGAGATCGAAGCACCTTCAGTTTCGAAGACTCCGTCGAATGTATCACACAAACATTCATCCGACGGGATTTCTGTAAAAACGGAACAAACTCGATACAAGACAAAATATTGCGATATATGCGAACGAAGTGATTTTAGTGAATCTGAATTAATAGCTCATCGTAAACTAGTTCACCATGTAAAGCCGGCGTCGAAGAACGGCGTCGTTAGTTTGCACTGTGCATACTgcaatgaaaattgtaaatctCGTACGGAATTAGAAAATCATATGAAGAGTCATTCGCAGAGTAGCGGTGTATCAGGAAAACACAAATGTATCATATGTGACGAGTTGTGTCCGTCGGCTGCTATTCTAGCCGAACATAAATTGACGCACTGTAAAGTGATATCTGGCAACTCTTGTACGCACTGCAAAGCGAAATTGACTAGCGACGAGCAGTTTTATTCGCATTTGATCGAACATTCCAATAACTGCAATAACAACAATAGCAGCAGTggcgttttaaataatattcagataACTTTGCCGACGCCGTGTGTGATATGTCGACAGACGTTAATGTCGAATATCGAAGTTCGAATGCACTCCCATTTTCATTTACGTAGTACGATTCCGTCCGCCGATTATCAATGTGTGTTGTGTTTGAAATGTTTCGATAAACCGAACGTGATCGCTGCAAACGGAACTTCGGACAATAAtatgacgacgacgacgacgacgtatATATGTAAAGATTGTTATGCACATCACAGTCTTTCGATCACGTATTCGAAACGGAAAGATACTACTAAATCGCATGTGCAGAAAACAGAATCGGCTTTAGATCCGGATCCGAATAATCAATATTCTTGTCTAAAGTGTCGAACGAGTTTCAATAACGAGCACGAGATTCAAATACATCTAACGACTCATCTTATCGCCGAAACTGCCGATTACATATGTCATCTCTGTCGAAATAAACTTTCGAGCTCTACAAAGCTACAAATACATTTAATCGAACACACGTTCGTCGGCTTTGGCAGTTACACGTGCTATATATGTTCTGCGGTTTTCACGGCCGCTCAAGGACTTCATGCGCACATGTTGGAACACGGTCTCGCGGCACGACCGTACGATTGTACGAGATGTAGTTCGAAATTTTTCTTTCGCGCCGAACTCGATAATCATAGTTTCAGTCATATGGAACGAGATTCTCTTCTACAACACAGTTCGATGCCACCGTTGAGCGGCAGTAGTAGTAGCGGCGTGTATTTGAACATTACTGACAAAGACATGATTTTGAATCGAACTGCTGTTGTCAATAGTTCGGAATGCTCGACGAAATTTTCAGATATGATCACCTTACTGAATCGTACGAAAACGCATTCAGGATCCGAACATAATATAAACGTCACTAACAACGACAATAGAAATAGCCCTTCTGAAGACAAACAAAATATCTCGTCGACGAATTCAAAAGAAGAAAACGATTTTATCGAAGTCAGATCTCCTGTCGAACTACATGAAACGAATAACGATATTCTAAAcgaataa
- Protein Sequence
- MMLFKGNSSRLELLIGKIQATKEHVTPRDIKDVLGTEAGSSWRSDTPDGPATPCSSVATPTPSSGGDDSELAFTVGATDTTPYACQFCRKAFPRLNYLKKHEQTHSDQMPFQCEFCSRLFKHKRSRDRHIKLHTGDKKYRCSHCEAAFSRSDHLKIHLRTHDNGKPFQCIVCNRGYNTSAALTSHMQSHKKQQQQQKTQQQQVHENQQQQYEILSGTRTVTNVEITSEHTPRPCSTEDNRTSSQSSLYCYQCSNSFHKIDELQNHIATCHKVDLTPSPVVNMNEVIVPSPSEQSYVEKISYSPKLACMYCTQDSFTTMEELQSHVQSTHKSILNGDLPEFSSSRKLPYIKTSSSPTIYSSISQFKSASSPSHFQHQCDLCTMRFSSFQNLQIHMFSSHRYSSVLPQAICCPYCSLPFHTAEMFAEHCARVHRTKNNSLSLQPEQVKPTDLTKKSSDDRSTKRLKKTADSHVDTTPASSSSSTPTNIQYEHIGTYLCNQCDAALPDFESFRSHLKLHIEQTDGSRNNNLHDHRNMIFDMLKESVMLPCPHCNQTFGDPASLERHLCTHFFTTITEYVCRNCSKTFPTPDELQKHLMDIHAHHLYRCSLCREMFDSKVAIQIHFAVKHSSECQMLRCLVCPSNTRSTFRNEKAGKMHIRANHENSWIMPPPLSTHNKLLRCHFCIAEFETDIEMQLHLTMHIQPFKCSICHKTFEVEYLLECHMQENHDTNKATTNGSNDLEIEAPSVSKTPSNVSHKHSSDGISVKTEQTRYKTKYCDICERSDFSESELIAHRKLVHHVKPASKNGVVSLHCAYCNENCKSRTELENHMKSHSQSSGVSGKHKCIICDELCPSAAILAEHKLTHCKVISGNSCTHCKAKLTSDEQFYSHLIEHSNNCNNNNSSSGVLNNIQITLPTPCVICRQTLMSNIEVRMHSHFHLRSTIPSADYQCVLCLKCFDKPNVIAANGTSDNNMTTTTTTYICKDCYAHHSLSITYSKRKDTTKSHVQKTESALDPDPNNQYSCLKCRTSFNNEHEIQIHLTTHLIAETADYICHLCRNKLSSSTKLQIHLIEHTFVGFGSYTCYICSAVFTAAQGLHAHMLEHGLAARPYDCTRCSSKFFFRAELDNHSFSHMERDSLLQHSSMPPLSGSSSSGVYLNITDKDMILNRTAVVNSSECSTKFSDMITLLNRTKTHSGSEHNINVTNNDNRNSPSEDKQNISSTNSKEENDFIEVRSPVELHETNNDILNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004960;
- 90% Identity
- -
- 80% Identity
- -