Nign003986.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:5356829-5367416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0081 0.66 11.4 3.3 1 23 469 491 469 491 0.98 2 15 0.15 12 7.4 5.4 1 23 514 536 514 536 0.96 3 15 0.00053 0.043 15.1 1.6 1 23 542 564 542 564 0.95 4 15 0.014 1.1 10.7 0.2 1 23 571 593 571 593 0.96 5 15 0.00045 0.036 15.3 2.5 1 23 599 621 599 621 0.98 6 15 0.00025 0.021 16.1 0.8 1 23 627 649 627 649 0.95 7 15 0.0032 0.26 12.6 0.6 1 23 656 678 656 678 0.96 8 15 0.0019 0.15 13.4 3.5 1 23 684 706 684 706 0.98 9 15 0.0011 0.086 14.1 0.6 1 23 712 734 712 734 0.95 10 15 0.011 0.93 10.9 0.1 1 23 741 763 741 763 0.97 11 15 0.22 18 6.9 1.9 1 23 769 791 769 791 0.96 12 15 0.0025 0.2 13.0 0.7 1 23 797 819 797 819 0.95 13 15 0.0012 0.096 14.0 0.7 1 23 826 848 826 848 0.97 14 15 1.1e-05 0.00087 20.4 1.1 2 23 878 899 877 899 0.96 15 15 0.73 59 5.2 0.0 5 20 906 921 904 923 0.92
Sequence Information
- Coding Sequence
- ATGTTCCACCTCTTCATCATCTGCAAATCATTACTCGATAGTAATCAAGTGGATTTACATAAATACGTCTTGGTTTGTTGGGGAAACAATATAGTGGAAAAACCCTTATCGAATGATTTCGTAGTTAGGCTGTACGAAAGTAGCGATAGTGTGAAAAATGTATCTGTACGAAGTTCGCAAAGGCTCAAGAAATCTGGCAAAAAAGTTCATCTAGCGACTCTGATGGCACTTTGGAGTTTATGTAGAACATGTTTATCGCAACATAACAACGCTTCTGACATATTTAGTGGAAAATGTTTCAATGAACAAACATTCAGTGAAATCTTAATGGACTATGCTTCGATACAACATCGCACGGTGGGAGTCGGGCCGACCGCGGCCATCCATCTACATATCTATGCAGGTTTAAACAGGAACGGAATCTCGCCGCTACATGCAATAGCTTCTTATGTGAGATttgtaaaagaagaaaaaaattccCAACAATTGTTATTTGTCAAATGTTTGCAAATTAATACAAAAGgtgaaacaatatttaataaattaagaagaTTTTTCGATGTAAAAGCTATACCCTCGAGTAAAATCCTCTCCGTTGCTACTGACGGTGCTCCGGCAATGGCAGGAGAACACCGAGGCTCTCTGGCATACTCAAAACAAGCTATACCGAATGTATTATCTGTACATTGTGTCATTCATCGACAAAATTTAGTCGCCAAAAATCTTAGTGAACGCTTTTGGTTTTTAGTGgttTGTAAGAATGAAAGATTGTCGTCGTTCATCTGCCATTCGTGTGCTGAGTATTTGAAGACGTTCGCTGCTTTCCGCAATAAATGTATCGAAACAGAGTCTGCATTATGTGATTTTCTTCAAGATTCACGCTTTGACATGAAAGTAAAAAAGGAACTGGAAGACAAGATAACAGTAATCGAAAAAGAATGTAGTTTTTCGATGcaggaaaaaatatcttttcgacAATGTTTACGAACCGATATCGATTCGTGCACAAAAAACGTCGATGAATCGAATATTGTAAAAGTTAAAACCGAAGTAGACGATGAAGAAACTAATGACGACAGTACGCAGTCATGTTTTTCTACATCGTACGAGAGAGGACCGGATGAAACTCTCAGAACGTACCTTTCGTTGCAAGAATCTATCGATATCAAAGAGGACAACGAGGATTTTGTCGACGATGAGAACACGACGTCGGAAGTATCACTCGACGTCGACGAACGTTCGAGTTTTTCGAACTCGGCAACACAGTTCTCTAGCGATACGACGAACGAATGCGAGCAAGTTTTGATCAAATGTAAATCGAGCGATGGGACATGCGTGACGGATTCGGACAACTGGGAAGATCGATCGTTAGAAAGTAGAAGAATTCGTTCAAGTCACGATTCGTTCACTTGCGACTCGTGCAATGGGTCGTTCGAGACGAAGACACATTTCGACGAACATTTAAAAACACACTGCGAAGAAAAAGAAGATCTCGTCTGTCGACGAGCGACTAAGAACGTCGACGTCTCTGATAGACCGTTTCCATGCGATCGATGCAAAATGTCGTTCTTGACGAAACATCAGTTATGCAAACATGTGTACATTCATACCGGCGAGAAGCCGTTCAAGTGTGATACGTGCGGCATGTCGTTCAATAGAAAAGAACAAATATACCGACACTCCTacgtgcattccaaaaaaaagaaaccgtACGCTTGCGATCTGTGCACGAAATCTTACTTCAGCCCCGTGCGTCTGGCCGCGCACAAGAACCTGCACTTTGGCAAAAAACCATTCAAGTGcaacgaatgcgaaaagtcgttttcgtgCAACACACTTTTGGCCGCGCATAAGAGAGTTCATACGAGTGAAAAACCATTCAAGTGCGACACGTGCAGTAGAGCGTTCGCTAGGAAAGCTACTTTAGTCAAACACTCCTACGttcattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCACCACGCTACTGGCCGCGCACAAGAACCTGCACATTGGCAAAAAACCATTCAAGTGcaacgaatgcgaaaagtcgttttcgtgCAACAAACTTTTGGCAATGCATAAGAGAGTTCATACGAGTGAAAAACCATTCAAGTGCGACACGTGCAGTAAAGCGTTCGCTATGAAAGCTACTTTAGTCAAACACTCCTACGttcattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACAGAATCTTTCTTCAGCACTCCGCTACTGGCCGCGCACAAGAAAGTGCACTTCGGCAAACAACAGTTCAAGTGCGACGAATGCGAAAAGTTGTTTTCGTGCATCAAACTTTTGGCCGTGCATAAGAGACTTCATACGAGTGAAAGACCATTCAAGTGCGACACGTGCAGTAGAGCGTTCGCTTTGAAAGATACTTTAGTCAAACACTCCTacgtgcattccaaaaaaaagaaacctTTCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCACCATGCAACTGGCCGCGCACAAGAAAGTGCACTTCGGCAAACAACCGTTCAACTCGTCGTTCGTGCGGAAAAAACTATTACTGGAATATTCGGTCGTTCATACCGGCAAGAGGCCGTCTTCGTGCGACATCTGCGACAAGTCGTTTTCGAACAACGCGCGTCTCCAGAACCACAAGAGACTGCACACGGGCAAAAAACCTTTCGTGTGCGGTGCCGCGTTTAGACTGAAAGTGTATTTACAGAAACATACGTATCTTTATACCGGACAGAAAATGCCGCATCAAGTAAACATGAATTAA
- Protein Sequence
- MFHLFIICKSLLDSNQVDLHKYVLVCWGNNIVEKPLSNDFVVRLYESSDSVKNVSVRSSQRLKKSGKKVHLATLMALWSLCRTCLSQHNNASDIFSGKCFNEQTFSEILMDYASIQHRTVGVGPTAAIHLHIYAGLNRNGISPLHAIASYVRFVKEEKNSQQLLFVKCLQINTKGETIFNKLRRFFDVKAIPSSKILSVATDGAPAMAGEHRGSLAYSKQAIPNVLSVHCVIHRQNLVAKNLSERFWFLVVCKNERLSSFICHSCAEYLKTFAAFRNKCIETESALCDFLQDSRFDMKVKKELEDKITVIEKECSFSMQEKISFRQCLRTDIDSCTKNVDESNIVKVKTEVDDEETNDDSTQSCFSTSYERGPDETLRTYLSLQESIDIKEDNEDFVDDENTTSEVSLDVDERSSFSNSATQFSSDTTNECEQVLIKCKSSDGTCVTDSDNWEDRSLESRRIRSSHDSFTCDSCNGSFETKTHFDEHLKTHCEEKEDLVCRRATKNVDVSDRPFPCDRCKMSFLTKHQLCKHVYIHTGEKPFKCDTCGMSFNRKEQIYRHSYVHSKKKKPYACDLCTKSYFSPVRLAAHKNLHFGKKPFKCNECEKSFSCNTLLAAHKRVHTSEKPFKCDTCSRAFARKATLVKHSYVHSKKKKPFACDLCTKSFFSTTLLAAHKNLHIGKKPFKCNECEKSFSCNKLLAMHKRVHTSEKPFKCDTCSKAFAMKATLVKHSYVHSKKKKPFACDLCTESFFSTPLLAAHKKVHFGKQQFKCDECEKLFSCIKLLAVHKRLHTSERPFKCDTCSRAFALKDTLVKHSYVHSKKKKPFACDLCTKSFFSTMQLAAHKKVHFGKQPFNSSFVRKKLLLEYSVVHTGKRPSSCDICDKSFSNNARLQNHKRLHTGKKPFVCGAAFRLKVYLQKHTYLYTGQKMPHQVNMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -