Basic Information

Insect: Neoneuromus ignobilis
Gene Symbol: salm
Assembly: GCA_029203775.1
Location: CP092096.1:4135838-4139581[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.2 16 7.0 0.1 2 23 7 28 6 28 0.97

2 15 2.5 2e+02 3.5 1.8 1 10 694 703 694 717 0.80

3 15 0.27 22 6.6 0.6 3 23 797 818 796 818 0.96

4 15 0.0017 0.14 13.5 1.5 1 23 826 848 826 848 0.98

5 15 5.5e-05 0.0044 18.2 1.8 2 23 851 872 850 872 0.97

6 15 0.00043 0.035 15.4 4.5 1 21 878 898 878 900 0.96

7 15 3.6e-06 0.00029 21.9 3.2 2 23 907 928 906 929 0.95

8 15 0.42 34 6.0 1.8 5 23 942 960 940 960 0.94

9 15 0.00021 0.017 16.4 2.2 3 23 967 988 966 988 0.97

10 15 0.43 35 5.9 0.2 2 23 1004 1024 1003 1024 0.93

11 15 1.2e-05 0.00097 20.3 1.4 1 20 1030 1049 1030 1052 0.92

12 15 0.00012 0.01 17.1 0.6 1 23 1060 1082 1060 1082 0.99

13 15 0.0017 0.14 13.5 6.9 1 23 1088 1110 1088 1110 0.98

14 15 2.2e-06 0.00018 22.6 3.9 1 23 1116 1138 1116 1138 0.98

15 15 0.0027 0.22 12.9 6.0 1 23 1144 1166 1144 1167 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.2	16	7.0	0.1	2	23	7	28	6	28	0.97
2	15	2.5	2e+02	3.5	1.8	1	10	694	703	694	717	0.80
3	15	0.27	22	6.6	0.6	3	23	797	818	796	818	0.96
4	15	0.0017	0.14	13.5	1.5	1	23	826	848	826	848	0.98
5	15	5.5e-05	0.0044	18.2	1.8	2	23	851	872	850	872	0.97
6	15	0.00043	0.035	15.4	4.5	1	21	878	898	878	900	0.96
7	15	3.6e-06	0.00029	21.9	3.2	2	23	907	928	906	929	0.95
8	15	0.42	34	6.0	1.8	5	23	942	960	940	960	0.94
9	15	0.00021	0.017	16.4	2.2	3	23	967	988	966	988	0.97
10	15	0.43	35	5.9	0.2	2	23	1004	1024	1003	1024	0.93
11	15	1.2e-05	0.00097	20.3	1.4	1	20	1030	1049	1030	1052	0.92
12	15	0.00012	0.01	17.1	0.6	1	23	1060	1082	1060	1082	0.99
13	15	0.0017	0.14	13.5	6.9	1	23	1088	1110	1088	1110	0.98
14	15	2.2e-06	0.00018	22.6	3.9	1	23	1116	1138	1116	1138	0.98
15	15	0.0027	0.22	12.9	6.0	1	23	1144	1166	1144	1167	0.96

Sequence Information

Coding Sequence: ATGAATTCAGAGAGCATCACTTGCCCTGTTTGTACGCTTTATCTCCGTAACGGGATCACGCTCGAACAGCATTTGCAGACTCATCCAAAAGATCAGGTTATCGAGGCGCTCGTCGATCTGACGAGCAGAAAGACGACGAGCGTCGTTTCGAATGGCGATCACAAAAAGAGGCAGCAGGGCCAGTATGCCGACTGCCAATCGCCGAACGTGAAAACGTACACACAACCGCCGTGGCATCAAAATCGCATGGTCGTGACCAACCCTCAGGTGATGTTGCCGATGCAGACCGTGAGCGTGGCGAATAACCAGTCCATATTTTATCAGCAATTTATGAGCAGCGTCGGTGCGCCGAATTTCCCGGCCATCAATGCGATGGTACCGCAATACGTCAGTATACCGAACGTTTTCAACCATCAGCACATGCTGATGAACCCGTGTGTGtatcagcagcagcagcagcaagtGCAGATCGTTTCGGGACCGTTAGTACCGCTGGGTCGTACGTTCGACGCCCCTTCCGAGGTCATCGTATCGCCGGTCGTGTCGGAAAGCCCACCCGACTCGAACACACAAATATCGACCTCGATTCGAGAAACGACGCAGCCAACCGTCGTATCGATGGTGGACGGCTCGCCGACGACGATACTGTCGAAAAAAGTCACGGACGGCGAAAAGAGATCGAACGACGTCCCGCGTACGGTCATAATAACGGAAATCAGTAGTGAACATTGTATACAGAGTCCGTCTTTGAAGAAGGAAGTTGTCGACACACCCGACGAACAACAAGCGATCGGTGCAACGGAACCGTCACAAACGCCAGAACCAGAGATACGATGCGACAATTCCGATTCTTTCGAAGTGATTTTCGACAAGATCAATCAAAATCCGGACCTCGCGATAGCGAAAACTGAAAAATTCCGATGCTCGAAGAACGACTCGTCGAAAGAACTGTACACAATAAGTTTGAGCGTGAACGAGTCCACCGAGACGATCGATCCAGACATCGCCGAGGACTACGAATATCTGGAGAAGAAGTCGGAACGCGCGTTGACGCCTATCGCGACGTCCAAGATCATGTTCGATCCGACGTCGGAGGATTTTGCGAATTCGATACTGCCTCATCTGAATACGTCGTTGAATATCGATGCACAGCAGGACGAGTGTGTCGTCGAAAGGAACACCGCCGCAGCTCGAGACTGTCCGCAGAAGAACGAACTTAGGAGCGCTGAAAACGAAGTTTGTTTCGATACAGACTACACCGAAGATAAACCGAACGTCGTCATCAAAGCGAACAACTCGACGCTGTTTTCTGATCGACGGAAGTTTGAACTGAACGATTCCGGCAAGTCGAACGTAATAATCCTACAAAATGAAATGATCCAATTGCCGTCGACCGAACTACCGTACGACAAGAACATCAAAAAAGACGAATCGGTCGAAATCACCGACGTGTTCGACAGCAACAACGGCACGTCGTACGACGACGTCGAAGCAACGGAAAAAGATGCAGTCCTCGAAAACAAAAAGTTCGAGTTGTCGTTCACGTCTTCCGTGCAAGATTCAATGCTGCCACATTCGGACATGGCCATAGGTTATGAATCGGCCGAATCTATGAACATCGTCGAATTCGACGGCATGAAGTTGGTCATACCCGGCGAGCTGATCAATACCAAAGCGCAGACGGCCGAAAGAAACTTTCATTACGGCGGCGACAACGTCGGGGAGAAGTCGCCGGTTCTCTTGAACATCGGCGATATCAACAAAAGCCCGTACGTCGTGGACGCCGAAGGACAAGAGGAAAGTGTTTCGGCCGAGAGCTTGAACATACGTGCGAACGAACGGATGCCGCCGAAAGGAGAACTCTCGGAACAGGAGAGCAACGGCGCCAGCGAAAGTGGATGGGGAaggGAGGGCAGCTCGGGTTTGTCGACGTCATACGATCTGCTGGCCCGCGAGAGTTGGGAAGCATCAGACTGTTCCGATACAGAAGTGCCTCCGCTGCAGAGCCGCGTCCCGTTACTTAATTGCTACATTACAGAAACGAAGAGCTTGGCACCGCCGAACACGCCGCCGCGACACTACAAATGTTCCGTGTGCAACGAATCGTTTTTATGTCCGAAAGAGCGACGCGTCCATCAGACGAAAGAGCACGGGTCGGAGAATCAGCAACAGACGGTCATACGTTCGTTGAAGAGCAGAGAGCGGAAAGTGATCAAGATCAAGTCGGAAACGAACGTCGAGACGATGTGCGACGACGACAACGGCTTCTCGAAGTCGTTCGAGACGCCGAATAACGTGAAAAAAGACGAGCTCACTTACAGCAGCGGCAAGATCGCCGAAACGTCCGCTAACAGCAAAGAGTTCGATCTCGGCGTGTCGAAGGCATTGTGTCAAGTGTGCAACGTTGAGTATCCGTCGATGAAGTTGCTGGTGAAACATCACCGGGAAATGCACAAGGAGGATCCGATTCCGAAGTACAAGTGCACGATCTGTTACCAAGTGTTCGCGTTCGATTCCAAATTCACTGAACACTTGCGGTTGCATCCGCTCGAGTGTACGATCTGCGGAAAATACTTCTATCGTCGTCAGAACATGAAGCTGCATTTGAAGCGACATCTCGGCATCAGGCCGTACAAGTGCGACATGTGCAAGAAATCGTTCATCACGAGACAAAAACTGAACGAGCACATGAACTGCCATACGGGAAACGCGCCGATCAAGTGCACGATGTGCGACGAGACGTTCCGTCGATACTCGAACCTGATACAGCACCGCAACACGCATCATTTCCGTACGAAGAAGAAGTACAAGGACTTCGTGTGCCACTGCGGCGAAGTGTTCCATTCGAAAAAGAAGTTAGTGTGGCATAGCGAAATACACGATTCGAAGCCGAAGGCGTGCGCGCACTGCAACGAAAAGTTCGTGCACATCGCCAGTCTGACGAGACATATGCGGAAGGCGCACAATCACCATTACGTGCCGGACGAAAAGCGCAAGTCGGAGAACGTCGAGTGCAAGGTGTGCAAGGGCATCTATCTGCGTACGTCGCTCGAGGTGCACATGAAGACGCACACGGGCGTCAAGCCGTACTCGTGCAACATTTGCAACAAGATGTTCTCGACGAAATGGAACCTGAAGCTGCACCGCTGGACGCACGCATCGCGCGCGTCCAAACCGTACAAGTGCAACTTGTGCAAGAGCGCGTTCATCCGCCAGCCAGATTACACAGCGCACATGAACTCGCACCGGAGCGTCAGGCCTTACACGTGCAACCATTGTGGCCGGCAGTTCATTCGCAAGTACAATTGCCAGAGGCACGTGAAGGAGCACGAACAGGATAAGTCGTTCAGTTGCAACGTGTGCGGTAAGACGTTCCACAGGTCGTACTATCTGAAAGAGCATCAGCGGATACATAGCGGCGCGAGGCCGTTCTCGTGTCATATCTGCGGCAAGATGTCGGCGACGAAGTCGAACCACAACAAACACGTCCGCATTCATCACGCACGCGAGCCGGTCAGCACCGAAGGTTAA
Protein Sequence: MNSESITCPVCTLYLRNGITLEQHLQTHPKDQVIEALVDLTSRKTTSVVSNGDHKKRQQGQYADCQSPNVKTYTQPPWHQNRMVVTNPQVMLPMQTVSVANNQSIFYQQFMSSVGAPNFPAINAMVPQYVSIPNVFNHQHMLMNPCVYQQQQQQVQIVSGPLVPLGRTFDAPSEVIVSPVVSESPPDSNTQISTSIRETTQPTVVSMVDGSPTTILSKKVTDGEKRSNDVPRTVIITEISSEHCIQSPSLKKEVVDTPDEQQAIGATEPSQTPEPEIRCDNSDSFEVIFDKINQNPDLAIAKTEKFRCSKNDSSKELYTISLSVNESTETIDPDIAEDYEYLEKKSERALTPIATSKIMFDPTSEDFANSILPHLNTSLNIDAQQDECVVERNTAAARDCPQKNELRSAENEVCFDTDYTEDKPNVVIKANNSTLFSDRRKFELNDSGKSNVIILQNEMIQLPSTELPYDKNIKKDESVEITDVFDSNNGTSYDDVEATEKDAVLENKKFELSFTSSVQDSMLPHSDMAIGYESAESMNIVEFDGMKLVIPGELINTKAQTAERNFHYGGDNVGEKSPVLLNIGDINKSPYVVDAEGQEESVSAESLNIRANERMPPKGELSEQESNGASESGWGREGSSGLSTSYDLLARESWEASDCSDTEVPPLQSRVPLLNCYITETKSLAPPNTPPRHYKCSVCNESFLCPKERRVHQTKEHGSENQQQTVIRSLKSRERKVIKIKSETNVETMCDDDNGFSKSFETPNNVKKDELTYSSGKIAETSANSKEFDLGVSKALCQVCNVEYPSMKLLVKHHREMHKEDPIPKYKCTICYQVFAFDSKFTEHLRLHPLECTICGKYFYRRQNMKLHLKRHLGIRPYKCDMCKKSFITRQKLNEHMNCHTGNAPIKCTMCDETFRRYSNLIQHRNTHHFRTKKKYKDFVCHCGEVFHSKKKLVWHSEIHDSKPKACAHCNEKFVHIASLTRHMRKAHNHHYVPDEKRKSENVECKVCKGIYLRTSLEVHMKTHTGVKPYSCNICNKMFSTKWNLKLHRWTHASRASKPYKCNLCKSAFIRQPDYTAHMNSHRSVRPYTCNHCGRQFIRKYNCQRHVKEHEQDKSFSCNVCGKTFHRSYYLKEHQRIHSGARPFSCHICGKMSATKSNHNKHVRIHHAREPVSTEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -