Nign003927.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:5046898-5050874[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0091 0.74 11.2 1.1 1 23 405 427 405 427 0.98 2 15 0.0008 0.064 14.5 0.4 1 23 444 466 444 466 0.97 3 15 3.7e-06 0.0003 21.9 2.1 1 23 472 494 472 494 0.98 4 15 0.67 54 5.3 0.4 1 23 500 522 500 522 0.90 5 15 0.021 1.7 10.1 0.7 1 23 529 551 529 551 0.95 6 15 0.00035 0.028 15.7 2.2 1 23 557 579 557 579 0.98 7 15 0.00081 0.066 14.5 0.4 1 23 585 607 585 607 0.95 8 15 0.0013 0.1 13.9 0.8 1 23 614 636 614 636 0.97 9 15 1.4e-05 0.0011 20.1 1.6 1 23 646 668 646 668 0.99 10 15 0.48 38 5.8 2.2 1 23 674 696 674 696 0.80 11 15 1.5e-05 0.0012 20.0 3.1 1 23 702 724 702 724 0.98 12 15 0.26 21 6.6 0.2 1 12 730 741 730 752 0.68 13 15 9.1e-06 0.00074 20.6 1.1 1 23 761 783 761 783 0.95 14 15 1.3 1e+02 4.5 0.0 5 20 793 808 792 809 0.93 15 15 0.0014 0.11 13.8 3.0 1 21 818 838 818 839 0.92
Sequence Information
- Coding Sequence
- ATGCAACAAATTTTCCCAGTTTTGAACAAAAAGCACTAccattttttgtattgttacgAAGATAGCGTACGTAAAACACCGTCATTACAACTCCTAGCGACAACATCTGAGCGAGATGAAGATGGACTAAGTGcatcttataacattttttcactgATTGCGAAGTCCGAAAAGCACCAATTCTCCGAAAAGTCCAAATTCTCTATACGACTTGACAAGTCATTTTTTCCGGGAAACGAAGCTTTGCTTTTAGCTTATGTGAGATttgtaaatgaagaaaaaatttcCCAACAATTGTTATTTGCCAAATGTTTACAAACTGATACGAAAGgtgaaacaatatttaataaattaaaaagatttttcgaTGTAAAAGCTATACCCTCGAGTAAAATCCTCTCCGTTGCTACTGACGGTGCTCCGGCAATGGCAGGCGGACACCGAGGCTCTCTGGCATACTCAAAACAAGCTATACCGAATTTATTATCTGTACATTGTGCCATTCATCGACAAAATTTAGTCGCCAAAAATCTTAGTGAACGCTTTTGGTTTGTAGTGgttTGTAAGAATGAAAGACTATCGTCGTTCATCTGCCATTCATGTGCTGAGCATTTGAAGACGTTCGCTGTTTTCCGCAATAAATGTATCGAAACAGAGTCTGTATTATGTGATTTCCTTCGAGATTTACGCTTTGACATAGAAGTAAAAAAGGAACCGGAAGACAAGATAACAGTAATCGAAAAAGAATGTAGTTTTTCCATGCCGGAAAAGAATTCTTTTCGACAATGTTTACGAACCCATATCGATTCGCGCACAAAAGACGTCGATGAACCGAATATTGTAAAAGTTAAAACCGAAGTAGACGATGAAGAAACTAATGACGGGAGTACGCAGTCATGTTTTTCTACATCGTACGAGAGAGGACCGGATGAAACTCTCAGAACGTATCTTTCGTGTCAAGAATCTATCGATATCAAAGAGGACAACGAGGATTTTGTCGACGATGAGAACACGACGTCGGAAGTATCGATCGACGTCGACGAACGTTCGAGTTTTTCGAACTCGGCACAAAAGTTCTCTAGCGATACGAGGAACGAATACGAGCAAGTTTTGATCAAATGTGAATCGAGCGATGGGACATGCGTGACGGATTCGGACAACTGGCAAGATCAGTCATTAGAAAGTAGAAGAATTCGTTCAGGTCACGATTCGTTCACTTGCGACTCGTGCAATGGGTCGTTCGAGACGAAGACACGTCTCGACGAACATTTAAAAACACACTGCGAAGAAAAAGAAGATCTCTACGTGCACtcgaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCGTTCGTCAAAGCCGATCGTCTGGCCACGCACAAGAATATGCACTTCGGCAGAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcgtCCAAAACAAATCTGGGTCAGCATAAGAAAGTTCACACGACTGAAAAACCATTCAAGTGCGACACGTGCAGCATGGCGTTCGCTCTAAAAACTATTTTAGTCAGACACTCCTacgtgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCACCACGGTACTGGCCGCGCACAGGAACTTCCACCTCGGCCAAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgtttttGTCCAAAACAAATCTGGGTAAGCATAAGAAAGTTCACACGACTGAAAAACCATTCAAGTGCGACACGTGCGGCATGGCGTTCGCTCTAAAAACTAGTTTAGTCAGACACTCCTacgtgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCACCACACAACTGGTGGTGCACAAGAACGTGCACAAGAACGTGCACATCACCAAAAAACCATTCAAGTGcaacgaatgcgaaaagtcgttttcgGCCAAAAAAAATCTGGGTCAGCATAAGAGAGTTCACACGGGTGAAAACTTGTTCAAGTGCgacgaatgcgaaaagtcgtttttGTGCAACGCATTTCTGGTCGAGCATAAGCGAATTCACACGGGTGAAAAACCTTTCAAGTGcaacgaatgcgaaaagtcgttttcgtCCAAAAAATATCTGGATCAGCATAAGAAAGTTCACATGGGTGAAAAACCATTCAAGTGCGACACGTGCGGCATGGCGTTCGCTTCGTTCGTGCGGAAAAAACTATTGCTGGAACATTCGGTCGTTTATACCGGCAAGAGGCCGTTTTTGTGCGACATCTGCGACAAGTCGTTTTCGAACAACGCGCGTCTCCAGAACCACAAGAGACTGCACACGGGCGAAAAACCTTTCGTGGGCGGTGTGTGCGGTGCCGCGTTTAGACTGAATGTGTATTTACGGAAACATACGTTTCTTTATACCGGACAGAAAATGCTGTATCTGTGTGAAATGTGCGAAAAATCGTATTTCCATAAACACGAATTAAAAAGGCATCAAGAGCGAGTCAATGATTTAAAAACCGAATGA
- Protein Sequence
- MQQIFPVLNKKHYHFLYCYEDSVRKTPSLQLLATTSERDEDGLSASYNIFSLIAKSEKHQFSEKSKFSIRLDKSFFPGNEALLLAYVRFVNEEKISQQLLFAKCLQTDTKGETIFNKLKRFFDVKAIPSSKILSVATDGAPAMAGGHRGSLAYSKQAIPNLLSVHCAIHRQNLVAKNLSERFWFVVVCKNERLSSFICHSCAEHLKTFAVFRNKCIETESVLCDFLRDLRFDIEVKKEPEDKITVIEKECSFSMPEKNSFRQCLRTHIDSRTKDVDEPNIVKVKTEVDDEETNDGSTQSCFSTSYERGPDETLRTYLSCQESIDIKEDNEDFVDDENTTSEVSIDVDERSSFSNSAQKFSSDTRNEYEQVLIKCESSDGTCVTDSDNWQDQSLESRRIRSGHDSFTCDSCNGSFETKTRLDEHLKTHCEEKEDLYVHSKKKKPFACDLCTKSFVKADRLATHKNMHFGRKPFKCNECEKSFSSKTNLGQHKKVHTTEKPFKCDTCSMAFALKTILVRHSYVHSKKKRPFACDLCTKSFFSTTVLAAHRNFHLGQKPFKCNECEKSFLSKTNLGKHKKVHTTEKPFKCDTCGMAFALKTSLVRHSYVHSKKKRPFACDLCTKSFFSTTQLVVHKNVHKNVHITKKPFKCNECEKSFSAKKNLGQHKRVHTGENLFKCDECEKSFLCNAFLVEHKRIHTGEKPFKCNECEKSFSSKKYLDQHKKVHMGEKPFKCDTCGMAFASFVRKKLLLEHSVVYTGKRPFLCDICDKSFSNNARLQNHKRLHTGEKPFVGGVCGAAFRLNVYLRKHTFLYTGQKMLYLCEMCEKSYFHKHELKRHQERVNDLKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -