Nign003996.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:5418926-5422862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0065 0.53 11.7 3.3 1 23 366 388 366 388 0.98 2 14 0.00052 0.042 15.1 0.7 1 23 405 427 405 427 0.97 3 14 9.4e-06 0.00076 20.6 1.8 1 23 433 455 433 455 0.98 4 14 6.7e-05 0.0054 17.9 0.3 1 23 461 483 461 483 0.95 5 14 0.0018 0.14 13.4 0.6 1 23 490 512 490 512 0.97 6 14 0.029 2.4 9.6 2.5 1 23 518 540 518 540 0.94 7 14 0.00076 0.061 14.6 1.6 1 23 546 568 546 568 0.98 8 14 5.2e-05 0.0042 18.3 1.9 1 23 574 596 574 596 0.95 9 14 0.0018 0.14 13.4 0.6 1 23 603 625 603 625 0.97 10 14 0.00012 0.0093 17.2 1.4 1 23 631 653 631 653 0.98 11 14 7 5.7e+02 2.1 0.1 1 9 659 667 659 678 0.84 12 14 0.00051 0.041 15.1 1.7 1 23 683 705 683 705 0.97 13 14 0.0014 0.12 13.7 0.2 1 23 711 733 711 733 0.95 14 14 0.00013 0.011 17.0 5.0 1 23 740 763 740 763 0.95
Sequence Information
- Coding Sequence
- ATGCAACAAATTTTCCTAGTTTTGAACAAAAAGCAGTAccattttttgtattgttacgAAGATAGAATACGTAAAACACCGTCATTACGACAACTCTTAGCGGCAACATCTGAGCGAGATGACGATGGACTAAGTGGAAACGAAGCTTTGCTTTTAGCTTATGTGAGATTTGTAAAAGAAGAAAAGAATTCCCAACAATTGTTATTTACCAAATGTTTACGAACTGATACGAAAGgtgaaacaatatttaataaattaaaaagatttttcgaTGTAAAATCTATACCCTCGAGTAAAATCCTCTCCGTTGCTACTGACGGTGCTCCGGCAATGGCAGGAGGACACCGAGGCTTTCTGGCATACTCAAAACAAGCTATACCGAATGTATTATCTGTACATTGTGCCATTCATCGACAAAATTTAGTCGCCAAAAATCTTAGTgttTGTAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCGTGTGCTGAGTATTTGAAGACGTTCGCTGCTTTCCGCAATAAATGTATCGAAACAGAGTCTGCATTATGTGATTTTCTTCGAGATTCGCGCTTCGACATAGAAGTAAAAAAGGAACTGGAAGACAAGATAACAGTAATTGAAAAAGAATGTAGTTTTTCCATGCCGGAAAAGATTTCTTTTCGACAATGTTTACGAACCCATATCGATTCGCGCACAAAAGACGTCGATGAACCGAATATTGTAAAAGTTAAAACCGAAGTAGACGATGAAGAAACTAATGGCGGGAGTACGCAGTCATGTTTTTCTACATCGTACGAGAGAGGACTGGATGAAACTCTCAGAACGTACCTTTCGTTACAAGAATCTATCGATATCAAAGAGGACAACGAGGATTTTGTCGACGATGAGAACACGACATCGGAGGTATCGATCGACGTCGACGAACATTCGAGTTTTTCGAACTCGGCACAAAAGTTCTCTAGCGATACGACGAACGAATTCGAGCAAGTTTTGATCAAATGTGAGTCGAGCGATGGGACATGCGTGACGGATTCGGACAACTGGGAAGATCGATCGTTAGAAAGTAGAAGAATTCGTTCAAGTCACGATTCGTTCACTTGCGACTCGTGCAATGGGTCGTTCGAGACGAAGACACATTTCgatgaacatttaaaaacacaCTGCGAAAAAAAAGAAGATCTCTACGTGCACtcgaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCGTTCGTCAAACCCTATCGTCTGGCCACGCACAAGAATATGCACTTCGGCAGAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcgtCCAAAACAGGTCTGGGTAAGCATAAGAAAATTCACACGACTGAAAAACCATTCAAGTGCGACACGTGCGGCATAGCGTTCGCTCAAAAAACTAGTTTAGTCAGACACTCTTacgtgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCACGAAATCTTACTTCAACACCACGCAACTGGCCGCGCACAAAAATGTGCACCTCGGCCAAAAACCGTTCAAGTGCgacgaatgcgaaaagtcgttttcgtgCAACAGAGTTCTGGCCCAGCATAAGAGTGTTCACACGGGTGAAAACCCGTTCAAGTGCgacgaatgcgaaaagtcgttttcgtgCAACGCACTGCTGGTCGAGCATAAGAGAGTTCACAATGGTGAAAAACCGTTTAAGTGCGACACGTGCGGCATGTTTTTCAATAGAAAAGGTAGTTTAAACAAACACTCGTacgtgcattccaaaaaaaagaaatcgtTCGCGTGCGATCTGTGCACGAAATCTTACTTCAACACCACGCAACTGGCCGCGCACAAAAATGTGCACCTTGGCAAAAAACCATTCAAGTGCAACGAATGCGAGAAGTTGCTTTCATCAAATAACTCTCTGCTCAGGCATATGAAAAATCACACGGgtgaaaaatcattcaagtGCGATACGTGCGGCATCACCGAGCGTCTGGCCGCGCACAAGAATATTCACCTTGGCAAAAATCCGTTCAAATGcaacgaatgcgaaaagtcgtttttGTCCAACGTCTATCTCAACAGACACAAGACAGTTCACACGGGCGAAAAACCTTTCGTGTGCGGTGTGTGCGGTGCCGCGTTTAGACTGAAAGAATATTTGCTGAAACATACGTATCTTCATACCGGACAGCAAATGCCGCATCAGTGTGAAATTTGCGAAAAATCGTATTTCCACAAAAGCAAATTGAAAAGGCATCAGGAACAagctcataaaataaatatcgagtGA
- Protein Sequence
- MQQIFLVLNKKQYHFLYCYEDRIRKTPSLRQLLAATSERDDDGLSGNEALLLAYVRFVKEEKNSQQLLFTKCLRTDTKGETIFNKLKRFFDVKSIPSSKILSVATDGAPAMAGGHRGFLAYSKQAIPNVLSVHCAIHRQNLVAKNLSVCKNERLSSFICHSCAEYLKTFAAFRNKCIETESALCDFLRDSRFDIEVKKELEDKITVIEKECSFSMPEKISFRQCLRTHIDSRTKDVDEPNIVKVKTEVDDEETNGGSTQSCFSTSYERGLDETLRTYLSLQESIDIKEDNEDFVDDENTTSEVSIDVDEHSSFSNSAQKFSSDTTNEFEQVLIKCESSDGTCVTDSDNWEDRSLESRRIRSSHDSFTCDSCNGSFETKTHFDEHLKTHCEKKEDLYVHSKKKKPFACDLCTKSFVKPYRLATHKNMHFGRKPFKCNECEKSFSSKTGLGKHKKIHTTEKPFKCDTCGIAFAQKTSLVRHSYVHSKKKRPFACDLCTKSYFNTTQLAAHKNVHLGQKPFKCDECEKSFSCNRVLAQHKSVHTGENPFKCDECEKSFSCNALLVEHKRVHNGEKPFKCDTCGMFFNRKGSLNKHSYVHSKKKKSFACDLCTKSYFNTTQLAAHKNVHLGKKPFKCNECEKLLSSNNSLLRHMKNHTGEKSFKCDTCGITERLAAHKNIHLGKNPFKCNECEKSFLSNVYLNRHKTVHTGEKPFVCGVCGAAFRLKEYLLKHTYLHTGQQMPHQCEICEKSYFHKSKLKRHQEQAHKINIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -