Nign004465.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:11047332-11050791[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4 1.1e+02 4.3 0.2 9 23 252 266 251 266 0.95 2 15 0.0031 0.25 12.7 3.6 2 23 295 316 294 316 0.93 3 15 0.00031 0.025 15.8 1.3 1 23 322 344 322 344 0.95 4 15 0.006 0.48 11.8 0.4 1 23 351 373 351 373 0.97 5 15 0.00012 0.0094 17.2 1.8 1 23 379 401 379 401 0.98 6 15 0.0004 0.033 15.5 0.9 1 23 407 429 407 429 0.95 7 15 0.006 0.48 11.8 0.4 1 23 436 458 436 458 0.97 8 15 8.5e-06 0.00069 20.7 0.4 1 23 464 486 464 486 0.98 9 15 0.00013 0.01 17.1 0.5 1 23 492 514 492 514 0.95 10 15 0.0027 0.22 12.9 0.5 1 23 521 543 521 543 0.97 11 15 1e-05 0.00085 20.5 2.3 1 23 549 571 549 571 0.98 12 15 0.00013 0.01 17.1 0.5 1 23 577 599 577 599 0.95 13 15 0.0027 0.22 12.9 0.5 1 23 606 628 606 628 0.97 14 15 7.7 6.2e+02 2.0 1.9 1 23 662 681 662 681 0.82 15 15 1.1 86 4.7 0.1 5 23 691 709 690 709 0.93
Sequence Information
- Coding Sequence
- atgttaaaaaagtcaTACCCTGAGGATTTTCTATCGCaaacaagagtttttgagtggTACAAGGCGTTCAAAGAGGGCTGTGAAGTTGTTGACGATGAACCACAATCTGGACGCCTCTTgacatcaactgacgacgaaCACGCAACTTTAGGATGTTGTAAATTTgttTGTAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCGTGTGCTGCGTATTTGAAGACGTTCGTTGTTTTCCGCAATAAATGTATCGAAACAGAGTCTGCACTATGTGATTTTCTTCGAGATTCGCGCTTCGACATAGAAGTAAAAAAGGAACCTGAGGACAAGATAACAGTAATCGAAAAAGAATGTAGTTTTTCCATGccggaaaaaaattcttttcgtCAATGTTTACGAACCGATATCGATTCGTGCACAGAAAACGTCGATGAACCGAATATAGTAAAAGTTAAAACCAAAGTAGACTTCGAAGAAACTAATGACGAGAGAACGCAGTCATGTTTTTCTACATCTTACGAGAAAGGATCGGATGAAAATCTCAGAACGTACCTTTCGTTACAAGAATCTATTGATATCAAAGAGGACAACGAGAATTTTGTCGACGATGAGAACACGACGTCGGAAGTACCACCGATCGACGCAAGAGAGACACGCGCGACGGATTCGGACAACAGCGAAGATCGATCGTTAGAAAGTAGAAGAATTCGTTCAGATCACGATTCGATCACTTGTGACTCGTACAGTGGGTCGTTCGAGACGAAAACACATCTCGACGTACATTTGAAAATACACTGCGAAGGAAAAGAAGATCTCCGTGCGACGAAGTCGCGCCGTCGACGAGCGACTAAGAACGTTGATGTTTTCGGTGGACCAATTCCATGCGATCAATGCAAAATGTCGTTCTCGACGAAACATCGGTTACGCAAACACAAGTACCTCCATACCGGCGAGAAGCCGTTCAAGTGCGACACGTGCGGCATGTCGTTcgttaataaatatagattaaacctacactcctacgtgcattcaaaaaaaaagaaaacgttCGCGTGCGATCTGTGCACGAAATCGTTCTTAAGGCCCGGGTATTTGGACGCGCACAAGAACCGGCACCTCGTCAAAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcgtgGAACAAAAGTCTGGTCCggcataaaaaaattcacacgGGTGAAAACCTGTTCAAGTGCGACACGTGCGACATGTCGTTCGTTACTAAAACTGAATTAGATCAACACTCTTACGTGCACtccaaaaaaaagaaaccaTTCGCGTGCGATCTATGCACGAAATCGTTCTTAAGGCCCGGGTATTTGGACGCGCACAAGAACCGGCACCTCGGCAAAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcgAGCAACATACTTCTGGTCCAGCATAGGATAGTTCACACGGGTAAAAACCTGTTCAAGTGCGACACGTGCGGTATGTCGTTTGCTCGGAAAAATGCACTAGGCCGACACTCCTACAtacattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCGTTTTTCTCTGCCGAGCGTCTGGTCTCGCACAAGAACGTCCACCTCGGCAAAAAACCGTTCAATTGcaacgaatgcgaaaagtcgttttcgAGCAAAAGATATCTTAGTGACCATAAGAGAGTTCACACGGGTAAAAACCTGTTCAAGTGCGACACGTGCGGTATGTCGTTTGCTCGGAAAAATGCACTAGGCCGACACTCCTACAtacattccaaaaaaaagaaaccgttCGCGTGTGATCTGTGCACGAAATCGTTTTTCTCCGCCGAGCGTCTGGTCTCGCACAAGAACGTCCACCTCGTCAAAAAACCGTTCAAGTGCAACAAATCcgaaaagtcgttttcgtgGAACAAAATTCTGGTCCagcataaaaaaattcacacgGGTGAAAACCTGTTCAAGTGCGACACGTGCGACATGTCCACCGGATGTCTGGTCGCGCACAGGAACCGGCACTTTGGCAAAAAACCATTCAAGTTCAACGATTGCGAAAAGTTGTATGTGGGCATCGAGAATCTCCTGAGACACAAGAAGGTGCACATGGGCGAAAAAACGGTTTGTGCGATGCCGCGTTTAGACTGA
- Protein Sequence
- MLKKSYPEDFLSQTRVFEWYKAFKEGCEVVDDEPQSGRLLTSTDDEHATLGCCKFVCKNERLSSFICHSCAAYLKTFVVFRNKCIETESALCDFLRDSRFDIEVKKEPEDKITVIEKECSFSMPEKNSFRQCLRTDIDSCTENVDEPNIVKVKTKVDFEETNDERTQSCFSTSYEKGSDENLRTYLSLQESIDIKEDNENFVDDENTTSEVPPIDARETRATDSDNSEDRSLESRRIRSDHDSITCDSYSGSFETKTHLDVHLKIHCEGKEDLRATKSRRRRATKNVDVFGGPIPCDQCKMSFSTKHRLRKHKYLHTGEKPFKCDTCGMSFVNKYRLNLHSYVHSKKKKTFACDLCTKSFLRPGYLDAHKNRHLVKKPFKCNECEKSFSWNKSLVRHKKIHTGENLFKCDTCDMSFVTKTELDQHSYVHSKKKKPFACDLCTKSFLRPGYLDAHKNRHLGKKPFKCNECEKSFSSNILLVQHRIVHTGKNLFKCDTCGMSFARKNALGRHSYIHSKKKKPFACDLCTKSFFSAERLVSHKNVHLGKKPFNCNECEKSFSSKRYLSDHKRVHTGKNLFKCDTCGMSFARKNALGRHSYIHSKKKKPFACDLCTKSFFSAERLVSHKNVHLVKKPFKCNKSEKSFSWNKILVQHKKIHTGENLFKCDTCDMSTGCLVAHRNRHFGKKPFKFNDCEKLYVGIENLLRHKKVHMGEKTVCAMPRLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -