Basic Information

Insect: Neoneuromus ignobilis
Gene Symbol: -
Assembly: GCA_029203775.1
Location: CP092090.1:17440314-17445252[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00068 0.055 14.8 4.1 1 23 227 249 227 249 0.97

2 11 2.1e-05 0.0017 19.5 1.5 1 23 255 277 255 277 0.98

3 11 0.00014 0.012 16.9 2.1 1 23 283 306 283 306 0.96

4 11 0.021 1.7 10.1 5.2 1 21 312 332 312 334 0.95

5 11 0.00021 0.017 16.4 1.9 1 23 340 362 340 362 0.99

6 11 1.3e-05 0.0011 20.1 2.0 1 23 368 390 368 390 0.98

7 11 0.00097 0.078 14.3 0.8 1 23 398 421 398 421 0.97

8 11 2.8e-05 0.0022 19.1 2.2 2 23 428 449 427 449 0.97

9 11 0.00028 0.023 15.9 0.3 1 23 455 477 455 477 0.98

10 11 2.1e-06 0.00017 22.6 2.5 1 23 483 506 483 506 0.97

11 11 1.2e-07 1e-05 26.5 1.4 1 23 520 542 520 542 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00068	0.055	14.8	4.1	1	23	227	249	227	249	0.97
2	11	2.1e-05	0.0017	19.5	1.5	1	23	255	277	255	277	0.98
3	11	0.00014	0.012	16.9	2.1	1	23	283	306	283	306	0.96
4	11	0.021	1.7	10.1	5.2	1	21	312	332	312	334	0.95
5	11	0.00021	0.017	16.4	1.9	1	23	340	362	340	362	0.99
6	11	1.3e-05	0.0011	20.1	2.0	1	23	368	390	368	390	0.98
7	11	0.00097	0.078	14.3	0.8	1	23	398	421	398	421	0.97
8	11	2.8e-05	0.0022	19.1	2.2	2	23	428	449	427	449	0.97
9	11	0.00028	0.023	15.9	0.3	1	23	455	477	455	477	0.98
10	11	2.1e-06	0.00017	22.6	2.5	1	23	483	506	483	506	0.97
11	11	1.2e-07	1e-05	26.5	1.4	1	23	520	542	520	542	0.97

Sequence Information

Coding Sequence: ATGACTACACAATTTGCACCCAACCAGATAAAACTGGAGGGTGCAGATGATTCAAGTGAAAATGCTACAGAAATACAAACTTATTTAGAAACATTCAATAAAGAAATTGAAGGAGGAGATGGAACAGTTACTCACTTAACAGtaaaacgAGATGATGGAGAAGATGATGGAGGAACATATTTTGTGGATCAATCAGGTCATTACTATTACCAAGCAAATGCAGATTCTCAGCCAGTTTTGGCTTTACGAGCACCTTCTCCTGGTGATGATGGTGTCATTGGATCTACAGATGATGGTgatgaaactgaagaatttgTTATTCAACGAGAAGatattgatgatgatgatgaagcaGCATTAGACTCGAAgggTAACTTACTTCATGAAAATGGTTCTAATCAAATGTTGATTAATTCTGGTGATGCTTTTCAAACAGTAACTATTGTACCTTCTGAAACAAGTCCGGGTGAAGTCAGTTATGTTTTGATTGTACAGCAACCAGATGATGAAGAAGCAGTTgataaaatatcagaaaatgCTGATGGAGATCAATCAGGATTAAATGTTTATGATTTTGATGAAAATGAAGAAGGTGGAATAATATATTCAGAAGCAGAAGatgataaatcaaaaattgttaaattattacctAGAAAATCTCAAACAGTCACTCAAGCCCATATGTGTAATTACTGTAATTATACAAGTCCTAAAagatatcTATTATCACGTCATATGAAAAGTCATTCAGAAGAAAGACCTCATAAATGTAGTGTATGTGAAAGAGGATTCAAAACATTAGCTTCACTTCAGAATCACGTAAATACACATACTGGTACAAAACCGCACCGCTGCAAATACTGTGAATCAGCTTTTACTACATcaggtGAATTAGTACGACATGTACGATATAGACATACTCATGAAAAACCTCATAAATGCCATGAATGTGACTATGCAAGTGTTGAGTTGTCTAAATTGAAAAGACATATAAGGTGTCATACAGGAGAACGGCCGTATCAGtgtcCTCATTGTACTTATGCAAGTCCAGACACGTTTAAATTAAAACGTCATCTAAGAATTCACACAGGGGAAAAACCATATGAATGTGATATATGTCATACCCGATTTACACAATCAAATTCATTGAAAGCACATAAACTTATCCATAATGTTGGAGATAAACCAGTTTTTCCATGTGAATTATGTCCGACAACCTGTGGTCGCAAAACAGATTTACGAATTCATGTTCAGAAATTACACACATCTGACCGACCACTTAAATGTAAACGATGTGGTAAATCTTTTCCAGACAGATATAGTTATAAAGTTCACAACAAAACTCACGAaggagaaaaatgttttaaatgtgaTTTATGTCCGTATGCCTCAATTTCGGCTCGCCATCTTGAGTCTCATATGTTAATACATACTGATCAAAAACCTTATCAATGTGATCAGTGTGATCAATCGTTCagacaaaaacaattattaaaacgacatcaaaatttatatcataatcCATCATATGTCCCTCCACCTCCTAGGGAAAAAACACATGAATGTTCAGAATGTGGTCGTGCTTTTAGACATAAAGGCAATTTAATTAGACATATGGCTGTTCATGATCCAGATTCAAGTGTTCAAGAGAAACAACTAGCTTTAAAATTAGgcagacaaaaaaaaatacaaataatagatGGGCAGCAAGTTGAAGTGATGCCTAGTCTTGGAAGTGATATGGAAGATGAAGATACAGATGGAGAAGTAATGGCTGTAGAAGGATCAGATGGACAACAGTATGTTGTATTAGAAGTTATTCAATTGGGTGATGAAGATGGGGAAGAAGGAGGAGGAGATACATTGCTTGAACCAGGACATATTTTACCTAATAGTgatattaatgAAGAAGCTGTATTGGCAGCTTTACAACAGGGTCAGAGATTAGGATCTCATAAAGTGTCGATAGATGAAAAGAAATTTGATACTGATAAAGACATGGAAACTTGTTTTGGCTTTGATgaAGAAGGAGATAATGAAGAAATGGAAGAAAAGCATACCATAAAATTACTTGAATCAATGGATGAAAATGATGAATCATAA
Protein Sequence: MTTQFAPNQIKLEGADDSSENATEIQTYLETFNKEIEGGDGTVTHLTVKRDDGEDDGGTYFVDQSGHYYYQANADSQPVLALRAPSPGDDGVIGSTDDGDETEEFVIQREDIDDDDEAALDSKGNLLHENGSNQMLINSGDAFQTVTIVPSETSPGEVSYVLIVQQPDDEEAVDKISENADGDQSGLNVYDFDENEEGGIIYSEAEDDKSKIVKLLPRKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKYCESAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICHTRFTQSNSLKAHKLIHNVGDKPVFPCELCPTTCGRKTDLRIHVQKLHTSDRPLKCKRCGKSFPDRYSYKVHNKTHEGEKCFKCDLCPYASISARHLESHMLIHTDQKPYQCDQCDQSFRQKQLLKRHQNLYHNPSYVPPPPREKTHECSECGRAFRHKGNLIRHMAVHDPDSSVQEKQLALKLGRQKKIQIIDGQQVEVMPSLGSDMEDEDTDGEVMAVEGSDGQQYVVLEVIQLGDEDGEEGGGDTLLEPGHILPNSDINEEAVLAALQQGQRLGSHKVSIDEKKFDTDKDMETCFGFDEEGDNEEMEEKHTIKLLESMDENDES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -