Nign003436.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092087.1:71464876-71469336[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.76 62 5.2 0.8 1 23 299 321 299 321 0.76 2 13 0.033 2.7 9.4 0.2 1 21 326 346 326 350 0.90 3 13 0.0012 0.094 14.0 0.2 2 23 382 404 381 404 0.93 4 13 5.2e-05 0.0042 18.3 0.6 1 23 410 432 410 432 0.98 5 13 0.0012 0.094 14.0 0.2 1 23 440 463 440 463 0.96 6 13 9.6e-07 7.7e-05 23.7 4.0 1 23 469 491 469 491 0.98 7 13 4.4e-05 0.0036 18.5 0.3 1 23 497 519 497 519 0.99 8 13 0.00017 0.014 16.6 2.7 1 23 525 547 525 547 0.97 9 13 7.4e-08 6e-06 27.2 0.6 1 23 553 575 553 575 0.99 10 13 2.1e-05 0.0017 19.5 3.9 1 23 581 603 581 603 0.97 11 13 4.9 4e+02 2.6 6.8 2 23 610 631 609 631 0.95 12 13 0.00021 0.017 16.3 3.2 1 23 637 659 637 659 0.98 13 13 1.4e-06 0.00011 23.2 1.5 1 23 665 687 665 687 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTGTTTTTACACGACTCGACGATTTGTAGACTGTGCTCGGAGGAAAATAcaaatggaatttatatttatacggACAACGAGAACGAACAGAACCTGAGttcttgtataaataaatatttacctcTGAAGGTGTCCGACGATGGAAAGTTACCGTGCACTATATGTCCGGGTTGTAATATACAACTCGAAGCGACGATGCAGTTCCTCGAGTTGATCGTCGCCGGTCAAGAGAGGCTCAGAGTGCTATACAAGAATCAGCAAGAGGAGTTACGTCGGATACGACGCGAGGCGGCCGACACGAACAAGGAAGGTTCCGAATCGCAAAACTACGAAGGCATCGTCCGAGCGATTATCGTGAACGAGAACGGCACGGAAAACGGCGAAAACGACGAGATTCTAGTAAAGATACTGCCGGACGGTTCTCTGTTCGCGCCGGAGCACGAGATCGCTCTCAGAACCGAAGGCCTCGAGAAACCGCGCCGGAAGAGAGGTCGGCCGCCGAAACCTCCCGCTCGGTCGCAGGAGACGGTCGAGGAGGCGGAACCGCCCGTCGACGACGCGAGAGAGGAACGAGAAGACGAAGAGCTCGACGCGGACGGTCGGAGAAAACGGAAACGGAAAGTCCCTACGAGGTTCAAGGAAGCCGTCCAGGGTAAGGAGCTCGAAAGGATATTCCGAGAGGAAGGCGTGATCGACGAGAACGAGTCTTCGGACGACGACGACGAAGGCCCGGACGTCGAACCGGAAGGTACCGCGAAGACGTTGACGGACGGCGATGAAGTTATAGGTCGGCTCGAATCTCAGGAGGGACGAGACCTAGGCGAACTCGTGATCATCAACAGGCAGCGGAACCGAGGCAGACCGAAAGGACGGAAACGGAGGCAGAAGTTCACGTGCGAGGTCTGCGGGAGAGGTTTTTTGCATTTCGGAAGGTACGTGATGCACAGGGCGATACACAGAGGCGTCAGGTACGAGTGTATCGGATGCCAGGCTCGTTTCGAGACGCGGGACGAGCTGACCGAGCACCAGAAAGACAGCGAGCACAGCGGCGAAGGGATCGTCGAAGGGCTGAACGATGAGGTACGGAAAGAAGCCGCTAGAGACGACGACGACGAGTCGTCCGGTAGGAGTAAAATTCCATGCGGGAGGTGCGACAAGAGCTTCATGACCAAACAGAGTTACGAAGTCCACTTGAAAGCGATTCACGAAGGATGGAAGCCGTTCAGTTGCAAATTGTGCGGTAAATCGTTCGCGTACGTCACGAGCCTCAAAGGCCACCTGATGTCGCATCGAGTCAAGACCGAGAAAGGCTATCCGTGCGACGTTTGCGGAAAGGTGCTCAACCATCCGAGCAGCGTCATATATCATAAACAGTCCGAACACAACAACGGCAGACGGTTCGTCTGTAACAAGTGCGACAAGAGCTTCAAGCACAAGCAGCTGTTGCAGAGACACCAGCTCGTCCATTCCGATAAGAGGCCGTACGAGTGCGATTCGTGCGGAGCGCAGTTCAAAGCGAAATCGAACCTGCTGAACCACCAACTGACGCACACCGGAGTGAAGAAGTATTTCTGCGAACAGTGCGGACAACAGTTCGCGCACAAGACCTCGTTGACGCTCCATTACAGGTGGCACTCCGGGCAGAAACCGTACAAGTGCGCGTACTGCGGCAAGCAGTTCTCGCAGAAGGGAAACTTACAGGAGCACGTGAGGATCCACACCGGCGTGAAACCGTTCTGTTGCGAGCAGTGCGGCCGCGCGTTCACGACTTCGTCGCAATTCAGACTGCACGTCAAGCGGCACACGGGGGAGAGACCGTGGTCGTGCACGTTCTGCGGGAAACGATTCCTGCACAAAGACACGTGGAAGTGCCACACGCGTCGGCATTTGGGCGAACGTCCGTACGAATGCGTGACCTGTCACAGAGGTTTTACGGAACATTGGGCGCTGAAGAAGCACATGCGGCTCCATACGGGCGAGAAACCTTACGTGTGCAACGTCTGCGATAAAGCGTTCGCGGACTGCAGCAATCTGTCCAAACATAAGAAAATACACGCCGGACGTACGACGAAGACGGCACCGTGGGAAAACCTAGCCGCTCCGTCGGCCGGCGACAGCGACACGGCGACGCTTTTTAAATCGGAGAACGCGGACGAAGGGTCTACCGAAGGTCTAGGACAGATATTTTACGTGACGTACCAAGATCCCGAGGAGCCGAACGAACCGAAAACCTTACATCTCGTCCACGAGATACCTCCCGAAGGGACGAACGACCAGGACACTTCGTCAACGAAACACGATCATGAAGAGTCGACGACAAACGGCGATCCGCATTCCGGCGACGGTCGTACGTTACAAGTCGCGACGTACGACGGCGAGCATCTGCAAGTCATGACTCCGGACGGCGTGACCGTACCGATAGAACTCGACCTGGGCGACGGTCGGACTCTATCGGTGAAGCAGAACGGAAACAGGTCGAAGTATTCGATAGAACCGGCGGTGAACGACGATTACGTCGTCGCGGGTAGCGATGAAATGGAAGTGACGGTCGAAAAGCAGAATGAATTCGATGACAAAACTTCCGAAGTCGAGACGCTCGACACCGAACACACGATCGAATTTATGACGCAGGACGGTCAAAAAGTGCAGCTGATAACTTACGAAGGTGAACGTCGAGGAATTCGAACATCGAGACCGAACAACACTCTGACGTAA
- Protein Sequence
- MEVFLHDSTICRLCSEENTNGIYIYTDNENEQNLSSCINKYLPLKVSDDGKLPCTICPGCNIQLEATMQFLELIVAGQERLRVLYKNQQEELRRIRREAADTNKEGSESQNYEGIVRAIIVNENGTENGENDEILVKILPDGSLFAPEHEIALRTEGLEKPRRKRGRPPKPPARSQETVEEAEPPVDDAREEREDEELDADGRRKRKRKVPTRFKEAVQGKELERIFREEGVIDENESSDDDDEGPDVEPEGTAKTLTDGDEVIGRLESQEGRDLGELVIINRQRNRGRPKGRKRRQKFTCEVCGRGFLHFGRYVMHRAIHRGVRYECIGCQARFETRDELTEHQKDSEHSGEGIVEGLNDEVRKEAARDDDDESSGRSKIPCGRCDKSFMTKQSYEVHLKAIHEGWKPFSCKLCGKSFAYVTSLKGHLMSHRVKTEKGYPCDVCGKVLNHPSSVIYHKQSEHNNGRRFVCNKCDKSFKHKQLLQRHQLVHSDKRPYECDSCGAQFKAKSNLLNHQLTHTGVKKYFCEQCGQQFAHKTSLTLHYRWHSGQKPYKCAYCGKQFSQKGNLQEHVRIHTGVKPFCCEQCGRAFTTSSQFRLHVKRHTGERPWSCTFCGKRFLHKDTWKCHTRRHLGERPYECVTCHRGFTEHWALKKHMRLHTGEKPYVCNVCDKAFADCSNLSKHKKIHAGRTTKTAPWENLAAPSAGDSDTATLFKSENADEGSTEGLGQIFYVTYQDPEEPNEPKTLHLVHEIPPEGTNDQDTSSTKHDHEESTTNGDPHSGDGRTLQVATYDGEHLQVMTPDGVTVPIELDLGDGRTLSVKQNGNRSKYSIEPAVNDDYVVAGSDEMEVTVEKQNEFDDKTSEVETLDTEHTIEFMTQDGQKVQLITYEGERRGIRTSRPNNTLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -