Nign003992.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- FAM200C
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:5399204-5409166[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0022 0.18 13.1 2.9 1 23 471 493 471 493 0.99 2 14 0.00012 0.01 17.1 0.8 1 23 510 532 510 532 0.97 3 14 3.5e-06 0.00028 22.0 2.9 1 23 538 560 538 560 0.99 4 14 0.0014 0.11 13.8 0.7 1 23 566 588 566 588 0.95 5 14 0.0095 0.77 11.2 0.2 1 23 595 617 595 617 0.97 6 14 0.00039 0.032 15.5 4.3 1 23 623 645 623 645 0.98 7 14 0.0016 0.13 13.6 0.9 1 23 651 673 651 673 0.98 8 14 9.1e-05 0.0073 17.5 1.7 1 23 679 701 679 701 0.98 9 14 0.00073 0.059 14.7 0.1 1 23 707 729 707 729 0.95 10 14 0.0013 0.11 13.9 0.4 1 23 736 758 736 758 0.97 11 14 0.00036 0.029 15.6 3.3 1 23 764 786 764 786 0.99 12 14 0.0062 0.5 11.7 2.1 1 23 792 814 792 814 0.98 13 14 0.00016 0.013 16.7 1.9 1 23 820 842 820 842 0.98 14 14 7.7e-06 0.00063 20.9 1.2 1 23 858 880 858 880 0.97
Sequence Information
- Coding Sequence
- atgaatataacaaatGTTCCTGATGTGCAGAGTTTATGTAGAGCATGTTTATCGCAACATAACAACGATTCTGACATATTTAGTGGAAAGTGTTTCAATGAACAAACATTCAGTGAAATCTTAATGGACTGTGCTTCGATACAACGAGATGACGATGGACTAAGTGCAtcttatatcattttttcacTGATTGCGAAGTCCGAAAAACAGCACACCATTGGTGAAGAACTTATTCTACCTGCTGTAAGTGAGATAATATGCACCGTGCTGCATAAACTAGCTTTCGATATTATTATAAGAAGAATTCCACTAAGTAATAATACAGTACGAAGAAGGATTGACGAAATGGCTCAGTGCTTAGAAAATTCTTTATGTGAGTACTTAAAAACATCTGAATTCTCTATACGGCTTGACAAGTCAACTTTGCCAGGAAACGAAGCTTTGCTTTTAGCTTATGTgagatttgtaaaaaaagaaaaaaattcccaACAATTGTTATTTGCCAAATGTTTGCAATCTGATACGAAAGgtgaaacaatatttaataaattaagaagaTTTTTCGATGTAAAAGCTATATCCTCGAGTAAAATCCTCTTGGTTGCTACTGACGGTGCTCCGGCAATAACAGGAGGACACCGAGACTCTCTAGCATACTCAAAACAAGCTATACCGAATGTATTATCTGTACATTGTGTCATTCATCGACAAAATTTAGTCGCCAAAAATCTTAGTGAACGCTTTTGGTTTGTAGTGgttTGTAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCGTGTGCTGAGTATTTGAAGACGTTCGCTGCTTTCCGCAATAAATGTATCGAAACAGAGTCTGCATTATGTGATTTCCTTCGAGATTCGCGCTTCGACATAGAAGTAAAAAAGGAACTGGAAGACAAGATAACAGTAATTGAAAAAGAATGTAGTTTTTCCATGCCGGAAAAGATTTCTTTTCAACAATGTTTACGAACCCATATCGATTCGCGCACAAAAGACGTCGATGAACCGAATATTGTAAAAGTTAAAACCGAAGTAGACGATGAAGAAACTAATGACGAGAGTACGCAGTCATGTTTTTCTACATCGTACGAGAGAGGACCGGATGAAACTCTCAGAACGTACCTTTCGTTACAAGAATCTATCGATATCAAAGAGGACAACGAGGATTTTGTCGACGATGAGAACACGACATCGGAGGTATCGATCGACGTCGACGAACATTCGAGTTTTTCGAACTGGGCACAAAAGTTCTCTAGCGATACGACGAACGAATGCGAGCAAGTTTTGATCAAATGTGAATCGAGCGATGGGACATGCGTGACGGATTCGGACAACTGGGAAGATCGATCGTTAGAAAGTAGAAGAATTCGTTCAAGTCACGATTCGTTCACTTGCGACTTGTGCAATGGGTCGTTCGAGACGAAGACACATTTCgatgaacatttaaaaacacaCTGCGAAGAAAAACAAGATCTGTACGTGCACtcgaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCGCCGGGCATCTGGCCGCGCACAAAAATATGCACCTTGGCAAAAAGCCATTCAAGTGCAACGAATGCAAGAAGTTGTTTTCATCAAACCAATCTCTGCTCAGGCATATGAGAAATCACACGAGTGAAAAACCATTCAAGTGCGATACGTGCGGCATGTCATTCATTGAGAAATTTAGTTTAGTCCAACACTCCTACGTGCACtcgaaaaaaaagaaaccgttCGCGTGCGATCTGTGTACGAAATCTTTCTTCGGCATCACTCAACTGGTCGCGCACAAGAATGTGCATCTCGGCAAAAAACCGTTCAAGTGCgacgaatgcgaaaagtcgttttcgtgCAACAAAAATTTGGTCCGGCATAAGAAAGTTCACACGGGTGAAACCCCGTTCAAGTGCgacgaatgcgaaaagtcgtttttGTTCAACATACTTCTGGTCCGGCATAAGAGAGTTCACACGGGTGAAAAACCTTTCAAGTGCAATGAATGCGAAAATTCGTTTTCGTCCAAAACAAATCTAGGTCAGCATAAGAAAGTTCACACGGGTGAAACACCGTTCAAGTGCGACACGTGCGGCATAGCGTTCGCTCTAAAAGGTAATTTGGTCAACCACTCCTATGtacattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCGCGAAATCTTTCTTCAGCACCTCGCAACTGGTGGTGCACAAGAACGTGCATCTCACCAAAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcaTGCAATACAGCTTTGGTCCGGCATAAGAGAGTTCACACGGGTGAAAACCTGTTCAAGTGCgacgaatgcgaaaagtcgttttcaTGCAACACAGTTTTGGTCTGGCATAAGAGAATTCACACAGGTGAAAAACCTTTCAAGTGcaacgaatgcgaaaagtcgttttcgGCCAAAAAATATCTGGGTCAGCATAAGAAAGTTCACACGGGTGAAAAACCTTTCAAGTGCGACACGTGCGGCATTGCGCCGTTTTCGTGCGACATCTGCGACAAGTCGTTTTCGAACAACGCGCGTCTCCAGAACCACAAGACAATGCACACGGGCGAAAAACCTTTCGTGTGCGGTGTGTTGCGGTGCCGCGTTTAG
- Protein Sequence
- MNITNVPDVQSLCRACLSQHNNDSDIFSGKCFNEQTFSEILMDCASIQRDDDGLSASYIIFSLIAKSEKQHTIGEELILPAVSEIICTVLHKLAFDIIIRRIPLSNNTVRRRIDEMAQCLENSLCEYLKTSEFSIRLDKSTLPGNEALLLAYVRFVKKEKNSQQLLFAKCLQSDTKGETIFNKLRRFFDVKAISSSKILLVATDGAPAITGGHRDSLAYSKQAIPNVLSVHCVIHRQNLVAKNLSERFWFVVVCKNERLSSFICHSCAEYLKTFAAFRNKCIETESALCDFLRDSRFDIEVKKELEDKITVIEKECSFSMPEKISFQQCLRTHIDSRTKDVDEPNIVKVKTEVDDEETNDESTQSCFSTSYERGPDETLRTYLSLQESIDIKEDNEDFVDDENTTSEVSIDVDEHSSFSNWAQKFSSDTTNECEQVLIKCESSDGTCVTDSDNWEDRSLESRRIRSSHDSFTCDLCNGSFETKTHFDEHLKTHCEEKQDLYVHSKKKKPFACDLCTKSFFSAGHLAAHKNMHLGKKPFKCNECKKLFSSNQSLLRHMRNHTSEKPFKCDTCGMSFIEKFSLVQHSYVHSKKKKPFACDLCTKSFFGITQLVAHKNVHLGKKPFKCDECEKSFSCNKNLVRHKKVHTGETPFKCDECEKSFLFNILLVRHKRVHTGEKPFKCNECENSFSSKTNLGQHKKVHTGETPFKCDTCGIAFALKGNLVNHSYVHSKKKRPFACDLCAKSFFSTSQLVVHKNVHLTKKPFKCNECEKSFSCNTALVRHKRVHTGENLFKCDECEKSFSCNTVLVWHKRIHTGEKPFKCNECEKSFSAKKYLGQHKKVHTGEKPFKCDTCGIAPFSCDICDKSFSNNARLQNHKTMHTGEKPFVCGVLRCRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -