Nign004459.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:10993097-10996597[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.6 48 5.5 0.5 1 22 273 294 273 294 0.94 2 17 0.063 5.1 8.6 5.3 1 23 323 345 323 345 0.94 3 17 3.7e-05 0.003 18.7 1.6 1 23 352 374 352 374 0.98 4 17 0.098 7.9 8.0 1.9 1 23 380 402 380 402 0.88 5 17 0.054 4.4 8.8 0.3 3 23 411 431 409 431 0.95 6 17 0.0034 0.28 12.6 3.1 1 23 437 459 437 459 0.98 7 17 5e-05 0.0041 18.3 3.9 1 23 465 487 465 487 0.95 8 17 0.0087 0.7 11.3 0.7 1 23 494 516 494 516 0.96 9 17 0.0015 0.12 13.7 3.4 1 23 522 544 522 544 0.98 10 17 0.001 0.083 14.2 0.8 1 23 550 572 550 572 0.95 11 17 0.25 20 6.7 0.1 1 23 579 601 579 601 0.97 12 17 3.1e-06 0.00025 22.1 1.8 1 23 607 629 607 629 0.98 13 17 1.2e-05 0.00098 20.3 4.1 1 23 635 657 635 657 0.95 14 17 0.11 9.2 7.8 0.1 1 21 664 684 664 685 0.91 15 17 1.3e-05 0.0011 20.2 1.8 1 23 692 714 692 714 0.97 16 17 0.0032 0.26 12.6 0.5 1 23 720 742 720 742 0.94 17 17 0.00086 0.07 14.4 3.9 1 23 749 772 749 772 0.95
Sequence Information
- Coding Sequence
- atgttaagaaaggcatACCCCGAAGATTTTCTATCGCAAACAAGGGTTTTTGAGTGGTATCAGGCGTGTAAAGAGGCCCGTGAAGTTATCGATGATGAACCACAATCTGGTCGTCCATCAACATCAACTGAAGACGAACATACAACTTTGGGATGTTGTAAATCTgttTGTAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCATGTGCTGCGTATTTGAAGACGTTCGTTGTTTTCCGCAATAAATGTATCGAAACAGAGTCTGCACTATATGATTTTCTTCGAGATTCACGCTTCTACATAGAAGTAAAAAAGGAACCGGAAGACAAGTTAACAGTAATCGAAAAAGAATGTAGTTTTTCCATGccggaaaaaaattcttttcgaCAATGTTTACGAACCGATATCGATTCGTGCACAAAAAACGTCGATGAACCGAATATAGTAAAACTTAAAACCGAAGTAGACGATGAAGAAACTAATGACGAGAGAACGCAGTCAAGTTTTTCTACATCTTACGGGAGAGGATCGGATGAAAATCTCAGAACGTACCTTTCGTTACAAGAATCAATCGTTATCAAAGAGGACAACGAGAATTTTGTCGAAGATGAGAACACAACGTCGGAAGTACCGATTGACGTCAACGAACGTTCGATTTTTTCGAACTCAGCACAAAACTTCTCTAGCCATACGATAAGCGAGCACGAGCAAGATTTGATCAAATGTGAAGCGAGCGATGAGAAACGCGTGACGGATTCGGACAACGAAGATCGATCATTAGAAAGTAGAAGAGTTCATTCAGGTCACGATTCGTTCACTTGTGACTCGTGCAGTGGGTCGTTCGAGACGCAGACACGTCTGGACGTACATAAAAAAACACAGTGCGAAGGAAAAGAAGATCTCCGTGCGACGAAGTCGCGCCATCGACGAGCGACTAAGAACGTCGACGTCTCCAATAAACCGTTTTCATGCGATCGATGCAAAGTGTCGTTCATGACGAGACATCAGTTAAGTAAACACACGTACTTCCATACCGGTGAGAAGAGACCGTTCACGTGCGAATTATGTGAAAAATCGTTTTTCAGTAACAGACTTCTGGCCAAGCATAAGAGAGTCCACAAGAGTGAAAACCCGTTTAATTGCGACACATGCGGCATGTCGTTCGCtcgaaaatgtattttagaccgacactcctacgtgcattctaaaaaaaagaaaccgcTTGCGTGCGATCTGTGCACGAAATCGTTCTTCAGTATCGAGCGTCTGGTCGCGCACAAGAACCTGCACCTCGGCAAAAAACCGTTCAAGTGCAACGAGTGCGAAAAGTCGTTTCCGTGCAATACATCTCTGGTCCAGCATAAGAAAGTTCACACGGGTGAAAAACCGTTTAAGTGCGACACGTGCGGCAAGTCGTTCATtcagaaatgtaatttaaaactacactcctacgtgcattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCGTTCTTCAATACCGAGCGTCTGGTCGCGCACAAGAACTTGCACTTCGGAAAAAAACCGTTCAAGTGCAACGAGTGCGAAAAGTCGTTTCCGTGCAACACATCTCTGGTCCGGCATAAGAAAATTCACACGGGTGAAAAACCGTTCAAGTGCGACACGTGCGGCATGtcgttcattaaaaaatatggattAGACCAACATTCCTacgtgcattccaaaaaaaagaaaccgttCGCGTGTGATCTGTGCACGAAATTGTTCTTGAGCGCCGCTCTTTTGGCCGAGCACACGAACCGGCATCTCGGCAAAAAACCGTTCAAGTGCAACGAGTGCGAGAAGTCGTTTTCGTCCAACACATCTCTGGTCCAGCATAAGAAAGTTCATACGGGTGAAAAACCGTTCAAGTGCGACACGTGCGGCAAGTCGTTCATtcagaaatgtaatttaaaccgacactcctacgtgcattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCGTTCTTGAGCGCCGCTCTTTTGGCCGAGCACAGGAACCGGTACCTCATCAAAAAACCGTTTAAGTGCAGCGAATGCGAAAAGTCGTATTCGAGCAACGCGAAACTCCAGAGGCACAAGACGGTGCACACGGGCGAACAACCTTTCATGTGCGGTTTGTGCGGTGCTGCGTTTAGACTGAAAGTGTATTTGCGGAAACATAAATATCTTCATACCGGACAGAAAATGCCGCATCAGTGTGAAATATGCCAAAAGTCGTATTTACATAAAAGCGAATTAAAAAAGCATCAGGAACAAgctcataaaataaataccgaGTGA
- Protein Sequence
- MLRKAYPEDFLSQTRVFEWYQACKEAREVIDDEPQSGRPSTSTEDEHTTLGCCKSVCKNERLSSFICHSCAAYLKTFVVFRNKCIETESALYDFLRDSRFYIEVKKEPEDKLTVIEKECSFSMPEKNSFRQCLRTDIDSCTKNVDEPNIVKLKTEVDDEETNDERTQSSFSTSYGRGSDENLRTYLSLQESIVIKEDNENFVEDENTTSEVPIDVNERSIFSNSAQNFSSHTISEHEQDLIKCEASDEKRVTDSDNEDRSLESRRVHSGHDSFTCDSCSGSFETQTRLDVHKKTQCEGKEDLRATKSRHRRATKNVDVSNKPFSCDRCKVSFMTRHQLSKHTYFHTGEKRPFTCELCEKSFFSNRLLAKHKRVHKSENPFNCDTCGMSFARKCILDRHSYVHSKKKKPLACDLCTKSFFSIERLVAHKNLHLGKKPFKCNECEKSFPCNTSLVQHKKVHTGEKPFKCDTCGKSFIQKCNLKLHSYVHSKKKKPFACDLCTKSFFNTERLVAHKNLHFGKKPFKCNECEKSFPCNTSLVRHKKIHTGEKPFKCDTCGMSFIKKYGLDQHSYVHSKKKKPFACDLCTKLFLSAALLAEHTNRHLGKKPFKCNECEKSFSSNTSLVQHKKVHTGEKPFKCDTCGKSFIQKCNLNRHSYVHSKKKKPFACDLCTKSFLSAALLAEHRNRYLIKKPFKCSECEKSYSSNAKLQRHKTVHTGEQPFMCGLCGAAFRLKVYLRKHKYLHTGQKMPHQCEICQKSYLHKSELKKHQEQAHKINTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -