Nign012272.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092090.1:40842773-40846117[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.052 4.2 8.8 0.9 1 23 209 231 209 231 0.98 2 15 0.053 4.3 8.8 3.7 1 23 259 281 259 281 0.96 3 15 0.0043 0.35 12.2 1.0 1 23 287 309 287 309 0.95 4 15 0.00014 0.012 16.9 0.6 1 23 316 338 316 338 0.97 5 15 2.5e-05 0.002 19.3 0.4 1 23 344 366 344 366 0.99 6 15 6.6e-05 0.0054 17.9 1.2 1 23 372 394 372 394 0.95 7 15 0.0015 0.12 13.7 0.1 1 23 401 423 401 423 0.97 8 15 0.23 19 6.8 2.3 1 23 429 451 429 451 0.96 9 15 6.6e-05 0.0054 17.9 1.2 1 23 457 479 457 479 0.95 10 15 0.0025 0.2 13.0 0.2 1 23 486 508 486 508 0.97 11 15 0.00042 0.034 15.4 0.4 1 23 514 536 514 536 0.98 12 15 0.031 2.5 9.5 2.1 1 23 542 564 542 564 0.98 13 15 8.8e-06 0.00071 20.7 1.4 1 23 570 592 570 592 0.95 14 15 4.5e-05 0.0037 18.5 0.1 1 23 599 621 599 621 0.97 15 15 0.00039 0.031 15.5 2.2 1 23 627 649 627 649 0.98
Sequence Information
- Coding Sequence
- ATGAACTACAATCTGGATGCCCgtcgacatcaactgacgacgaaCACGCAGCTTTGGGATATTgtttgtaaaaatgaaagatTATCGTCGTTCATCTGCCATTCATGTGCTGAGTATTTGAAGACGTTCGCTGTTTTCCGCAATAAATGTGTCGAAACAGAGTCTGCATTATGTGATTTCCTTCGAGATTCGCGCTTcgacatagaaataaaaaaagaaccggaaaataatataacagaCATCGATAAAGATTGTAGTTTTTCCTTGCagcaaaaaatatcttttcgcCAATGTTTACGAACCGATATCGATTCGTGCACAAAAAACGTCGATGAACTGAATATTGTAAAAGTTAAAACCGAAGTAGACGATGAAGAAACTAATGACAAGAGAACGCAGTCATGTTTTTCTACATCGTATGAGAGAGGATCGGATGAAAATCTCAGAACGTATCTTTCGTTACAAGAATCGATCGATATCAAAGATGACAACGAGGATTTTGTCGACGATGAGAACACGACGTCGGAAGTACCGATCGACGCAAGAGAGACACGCGCGACGGATTCGGACAGCTGGGAAGATCAGTCATTAGAAAGTAGAAGAATTCGTCCAGGTCACGATTCGTTCACTTGCGACTCATGCAATGGATCGTTCGAGATGAAGACACGTCTCGACGAACATTTAAAAACGCACTGCGAAGAAAAAGAAGATCTCGGCGCGACGAAGTCGCACCATCGACGAGCGACTAAGAACGTCGAAGTCTCCGATAAGCCGTTTCCATGCGATCGATGCAAAATGTCGTTCTTGATGAGACATCAGTTACGTAAACATATGTACCTTCATACTGGCGAGAAGCCGTTCAAGTGTGACATGTGCAGCATGTCATTCGTTGAGAAATCTAAATTAGACCAACACTCCTACGTGcattcaaaaaaaaagaaatcgttCGCGTGCGATCTGTGCACGAAATCTTTTTTCAGCAACACTCAACTGGTCGCGCACAAGAACGTCCACCTCGCCAAAAAACCGTTCAAGTGCGACGAATGCGAAAAGTTGTTTTCGCGCAATGCACTTCTGGTCGAGCATAAGAGAGTTCACACGGGTGAAAAACCGTTTAAGTGCGACACGTGCGGCATCtcattcagtaaaaaaagtagTTTAGACCAACACTCGTacgtgcattccaaaaaaaagaaaccgttCGCGTGCGATTTGTGCACAAAATCTTTCTTCCGCCCCGGGGTTCTGGCCGAACACAAGAACGTCCACCTCGGCAAAAAACCGTTCAAGTGCGACGAATGCGAAAAGTTGTTTTCGTGCAACTCAATTCTGGTCCAGCATAAGAGAGTTCACACGGGTGAAAAACCGTTTAAGTGCGACACGTGCGGTATCtcattcagtaaaaaaagtagTTTAGACCAACACTCGTacgtgcattccaaaaaaaagaaaccgttCGCGTGCGATTTGTGCACAAAATCTTTCTTCCGCGCCGGGGTTCTGGCCGAGCACAAGAACGTCCACCTCGCCAAAAAACCGTTCAAGTGCgacgaatgcgaaaagtcgttttcgtgGAACGCAGTTTTGGTCCGGCATAAGAGAATTCACACGGGTGAAAACACGTTCAAGTGCGACGAATGCGAAAAGTTGTTTTCGTGCAACGCATTTCTAATCGAGCATAAGAGAGTTCACACGGGTGAAAACCCGTTTAAGTGCGACACGTGCGGCATGTCGTTCAGTCAAAAAAGTAGTTTAGACCGACACTCGTacgtgcattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACAAAATCTTTCTTCCGCGCCGGGGATCTGGCCGCGCACAGAAATGTACACATCGGCAAACAATCGTTTAAGTGcaacgaatgcgaaaagtcgttttcgtgCAATGGCGATCTCAACGATCACAAGATGATTCACGCGAACAAGAGAGcttga
- Protein Sequence
- MNYNLDARRHQLTTNTQLWDIVCKNERLSSFICHSCAEYLKTFAVFRNKCVETESALCDFLRDSRFDIEIKKEPENNITDIDKDCSFSLQQKISFRQCLRTDIDSCTKNVDELNIVKVKTEVDDEETNDKRTQSCFSTSYERGSDENLRTYLSLQESIDIKDDNEDFVDDENTTSEVPIDARETRATDSDSWEDQSLESRRIRPGHDSFTCDSCNGSFEMKTRLDEHLKTHCEEKEDLGATKSHHRRATKNVEVSDKPFPCDRCKMSFLMRHQLRKHMYLHTGEKPFKCDMCSMSFVEKSKLDQHSYVHSKKKKSFACDLCTKSFFSNTQLVAHKNVHLAKKPFKCDECEKLFSRNALLVEHKRVHTGEKPFKCDTCGISFSKKSSLDQHSYVHSKKKKPFACDLCTKSFFRPGVLAEHKNVHLGKKPFKCDECEKLFSCNSILVQHKRVHTGEKPFKCDTCGISFSKKSSLDQHSYVHSKKKKPFACDLCTKSFFRAGVLAEHKNVHLAKKPFKCDECEKSFSWNAVLVRHKRIHTGENTFKCDECEKLFSCNAFLIEHKRVHTGENPFKCDTCGMSFSQKSSLDRHSYVHSKKKKPFACDLCTKSFFRAGDLAAHRNVHIGKQSFKCNECEKSFSCNGDLNDHKMIHANKRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -