Nign014304.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092091.1:24876369-24879559[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00054 0.044 15.1 3.6 1 23 14 36 14 36 0.97 2 15 0.013 1 10.7 0.4 1 23 41 64 41 64 0.92 3 15 0.011 0.87 11.0 0.8 2 23 68 90 67 90 0.96 4 15 0.00043 0.035 15.4 0.1 2 20 99 117 99 119 0.88 5 15 0.6 49 5.5 1.2 1 23 127 149 127 149 0.96 6 15 0.00035 0.028 15.7 0.1 1 23 155 177 155 177 0.98 7 15 0.0026 0.21 12.9 3.7 1 23 183 205 183 205 0.93 8 15 0.00078 0.063 14.6 2.9 1 23 211 233 211 233 0.99 9 15 0.00049 0.04 15.2 0.0 3 23 539 559 537 559 0.96 10 15 0.0082 0.66 11.4 4.4 3 23 601 622 601 622 0.97 11 15 4.2e-05 0.0034 18.6 0.1 1 20 632 651 632 653 0.94 12 15 0.00018 0.015 16.5 1.0 1 23 662 684 662 684 0.99 13 15 4.9e-05 0.0039 18.4 0.4 2 23 691 712 690 712 0.97 14 15 0.00015 0.012 16.8 1.4 1 23 718 740 718 740 0.96 15 15 0.013 1 10.7 3.8 1 23 746 768 746 768 0.98
Sequence Information
- Coding Sequence
- atggaagtagatatatcaaaaaataaacacattaaaaaatatgaatgtaaaaCCTGTAACAAACAATATAGgttcaaaaatagtttaaagaAGCATGAAGCTCGTCATGAATATAATGGTTTTGCATGCCGAAACTGTGGTGAATCCTTTAGTTCTGCAAAGTTGAGGGGGAAACATCGTGAAAGTGTTCACaaggTATGGCAATGTTTTATCTGCCATATTAGGTTTAATtcagaaaatgaatatttaaatcatgtGGAAACTTTACATGAAGGAAGGAATAGGGATTTAGCTGTATGTAACATATGTGGAAAACAGTTTAAAAGTAAATCTCAATTAGCACCTCACCTAGCATCAAAATGTGGAACTGTTAAAAGatttcatTGTGATATATGTGGTGCATTATTGATGACAACTGGTGCACTTCATAATCATCGATTAAGACACACAGGAAACCATTCCTACATGTGTAGGTTCTGTGCTAAAACTTTTGTTTCTGCTGGACAGCTTGCAGTTCATGAACGGGTTCACACTCAAGAAAAAGCATTTGTTTGTGAGgttTGCAATAAAGGATTTTGCCACCGACAAAGTTTAATTACACACAGCACATTACACACAGGCATTAAACCATTTCGGTGTGAAGGTTGTAATAAAGATTTTTCTTGTATTGGAAATTTGCTCAAACATCGCAGAACTCATGCAGATACCTGTGGTGCTTTGCCACTGACTACACATAGGGTTAAAAATCCAGAAACACGAGTTAAAGTTCAAGCAAATACTCCAAATGGAATTAAACTTagacagaataaaaaaaaactgctcATAATTAACAAAAGTGAAAAAGTTAAAtgtgaaaatgatatttatagtGAAAATAATTCAGATAATATATCAGTGGTTGAAAATTCAATgagtaaattaattcaaaaaatatcatgtgAATTTATTCAAGCatctaatttgaaaataaatgataaacaaGAAGATGTTTCTAAACAATTTGAACAAAACATCGATAGTATTAATCTAAACATTGAAACATGTACTACAAACATTCCATTTactaaacaagaaataaataaaaatattgatgaattaaattcatttgaaaataatgaaattaaattgaatgaaataaatgacactaaaaaagaaaatagattaaatttaagaaatgtttctacattaatttgtaaacaaaatactaataaacatataaatgatttaaaagatTGTGAATCTAGTAttgatacagaaaaaaatatcaaaagtgaatctgtaaataatttttcaccaACATGTCAGCAAGAAAATAtagacaaaaatattgaaagatgTAGTGAAGTTTCTGTGAAACCGGAAAATATAGAGCTTAAAAATGAGATCTCTGATGATAATGACATAGATCAAATAAATGATCATAATGACATCCAACTTGATAATTTTTCAGAAGATGATAGctttaaattagttaaatcaaattccaaaaataataaactgaaaaagACTGCTCGAAGTAaaactaaaagaaaattaaaagaaaatatatcaaagatAATTGATGAGGAATCATttagaaatgaaagaaaaacagGTAAAGGTGATGATATGGCGTGTAAAATATGTGGTCTCGTTTTTAATCGTGTTGCTTGGTTAGTGAGACATGAAGCTACACATGAGAAAGGATCTATAgaatcaaataaatcaaaatattttaaatgtaattgttgCCATGAAAGTTTCCAGACTCGTGATGAACACACAAATCACCAGGAAAAATTCCACAAAAATGAACtcggTTGCAACATTTGCAATAAAATGTTTGCAAAACGAGATAGTCGGCGAACACATATGAATTATTGTCATAAAGGGATTCCTCGAAGAGTTTATGTTTATGTTTGTGATAGATGCGGTAAAACTTTTAAGCAAAAGAATGCTTTAAGTGCACATGAAATCAGTAATTGTGGAATATctggaaaaatattcaaatgtgaaATATGTGAGAAGCAGTATAGTAATATTTACAGTCGACGAGCACATATGAAAATACATGAAGGAGCAAAAGAACAAGTTTGCAAATACTGTGGAAAAAGCTTTGTTTGGAAAGGACAGTTAAAAGTTCATGAAAGAAGTCATACTGGGGAAAAACCTTACAAATGTCAATTTTGTCCTAAAGCATTCGCTCATAGAGAGAGTCTTATCACTCATAACAGTATTCATACTGGATTTAAGCCACATGTTTGTGAGGGATGTGGGTCACGTTTCTCTTGTATAggcaatttatttaaacaccGTCGTACACATTCATCAGTTTGTTCTATAACAACATCAGAAGAAgagataataaaagaaaaatataaagtgcATTTGAATATGGAAGgagttaaattaaaacataattccCAGCAGAAAATTGcagaaaaagaagaaaataaaaatgtttctgtaaattaa
- Protein Sequence
- MEVDISKNKHIKKYECKTCNKQYRFKNSLKKHEARHEYNGFACRNCGESFSSAKLRGKHRESVHKVWQCFICHIRFNSENEYLNHVETLHEGRNRDLAVCNICGKQFKSKSQLAPHLASKCGTVKRFHCDICGALLMTTGALHNHRLRHTGNHSYMCRFCAKTFVSAGQLAVHERVHTQEKAFVCEVCNKGFCHRQSLITHSTLHTGIKPFRCEGCNKDFSCIGNLLKHRRTHADTCGALPLTTHRVKNPETRVKVQANTPNGIKLRQNKKKLLIINKSEKVKCENDIYSENNSDNISVVENSMSKLIQKISCEFIQASNLKINDKQEDVSKQFEQNIDSINLNIETCTTNIPFTKQEINKNIDELNSFENNEIKLNEINDTKKENRLNLRNVSTLICKQNTNKHINDLKDCESSIDTEKNIKSESVNNFSPTCQQENIDKNIERCSEVSVKPENIELKNEISDDNDIDQINDHNDIQLDNFSEDDSFKLVKSNSKNNKLKKTARSKTKRKLKENISKIIDEESFRNERKTGKGDDMACKICGLVFNRVAWLVRHEATHEKGSIESNKSKYFKCNCCHESFQTRDEHTNHQEKFHKNELGCNICNKMFAKRDSRRTHMNYCHKGIPRRVYVYVCDRCGKTFKQKNALSAHEISNCGISGKIFKCEICEKQYSNIYSRRAHMKIHEGAKEQVCKYCGKSFVWKGQLKVHERSHTGEKPYKCQFCPKAFAHRESLITHNSIHTGFKPHVCEGCGSRFSCIGNLFKHRRTHSSVCSITTSEEEIIKEKYKVHLNMEGVKLKHNSQQKIAEKEENKNVSVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -