Nign006016.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- zfy1
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:47461766-47463145[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00019 0.016 16.5 0.4 2 23 116 137 115 137 0.96 2 12 1.5e-07 1.2e-05 26.3 0.9 1 23 145 167 145 167 0.98 3 12 1.2e-05 0.00095 20.3 0.3 1 23 173 195 173 195 0.99 4 12 0.00011 0.0091 17.2 0.3 2 23 201 222 200 222 0.97 5 12 5.9e-06 0.00047 21.3 5.4 1 23 228 250 228 250 0.98 6 12 0.00098 0.079 14.3 5.6 1 23 256 279 256 279 0.97 7 12 0.028 2.3 9.7 0.3 2 23 287 307 286 307 0.95 8 12 0.11 8.6 7.9 4.3 1 23 313 336 313 336 0.91 9 12 4.4e-05 0.0035 18.5 2.4 3 23 349 369 347 369 0.96 10 12 0.0001 0.0085 17.3 1.0 1 23 375 398 375 398 0.95 11 12 0.0019 0.15 13.4 3.3 1 23 404 426 404 426 0.97 12 12 6.9e-07 5.6e-05 24.2 0.4 1 23 432 454 432 454 0.98
Sequence Information
- Coding Sequence
- atgtataaagATGAGTTTGAAAATGTAGAAATTGATAGATTACCAAATAATCAGTTATCAACTgatcaattaattaatgaaaccaTTACAGATGATGTTGAATATGATGAAAATACTCATGTATCTTCAAATGCTAGTTTTGACAATGTAGAATTATCAGATAAGTTAAATAATGTAAGTGATGATTGTACTTCAGTAGatgatacttttaataaaatacctcCTGTGATTACAAATTCACAATTAAACACTGCTAATATTCTATCTCAAAAAGATACATTAAATGGCAATCGTGTAAAAAAAGCGATTTTATTAGGACCAGATAAGTGTGATACATCTACATTaacttgtaaaatatgtgataaaGTTCTTGTAAGTATTCATACACTTGCAAGGCACATGGAATTACATGAAGATaatcgaaaatttaattatgtgtgTTCCATATGTAATAAGGGTTTTTATGACAGAGGTAATTTAACAAAACATATGAGTCGTCATCAAGGAGATATTAGGTATACTTGTGAAATGTGCCGTAAAGGATTTTATGAACTTAGTGCTCTTGCAGTTCATATGAGAAAACATAAAGTTGATCCAATTACATGTCAGATTTGTGGGAAACAATTTATGGTTCAATTACAACTTGACATCCATATGAAAACACATAGTACAGAAAAAGAACATACCTGTGATAAATGTGGTAAAGCTTTTTTTCAACCACATCTTCtcaaaaaacatcaaaaatcgCATGTTGATGCTCGAATGTATCCTTGTTTTTTATGTGATAAAGAATTTAAAGATGATTATAGTCTTAAACTTCATCATAGACGTTGTCATACTGATACACCAAAGAAAGTTGTATGTAATGTTTGTGGAAAAGCAGTCGGTCAGTATCATATTAAAACTCACATGTTATTGCATAGTGGTGTCAAACAGTATAAATGCACACAGTGTTCAAGTgcttattttcgaaaatatgaattaactgcacattgtaaaattaaacataaaagcCATGGTGAACCAAGAATTTATAGGCATCTTTGTAGTATTTGTGGAAAACAGTGCATTTCACCAAAggatttaaaaattcatgtcCGAACCCATACTGGAGAACGTCCTTTCCATTGTGActtatgtgaaaaaaaatataaaactcaaTGGGCATTGCAGAGCCATGTTCGAGCTGCACATATGGATGAAAGACCTCATATTTGTGACGTATGCTCTAAAGGATTTCATACATCTCGTATATTAAGAATACATATGCGTACACATACTGGTGAGCGGCCTTATGTATGTCAGTTATGTGAAAGGGCGTTCACACAGAAGGCTGCACTCAAAACACATATGAAAATTCATTCAATAAATCTTGATTAG
- Protein Sequence
- MYKDEFENVEIDRLPNNQLSTDQLINETITDDVEYDENTHVSSNASFDNVELSDKLNNVSDDCTSVDDTFNKIPPVITNSQLNTANILSQKDTLNGNRVKKAILLGPDKCDTSTLTCKICDKVLVSIHTLARHMELHEDNRKFNYVCSICNKGFYDRGNLTKHMSRHQGDIRYTCEMCRKGFYELSALAVHMRKHKVDPITCQICGKQFMVQLQLDIHMKTHSTEKEHTCDKCGKAFFQPHLLKKHQKSHVDARMYPCFLCDKEFKDDYSLKLHHRRCHTDTPKKVVCNVCGKAVGQYHIKTHMLLHSGVKQYKCTQCSSAYFRKYELTAHCKIKHKSHGEPRIYRHLCSICGKQCISPKDLKIHVRTHTGERPFHCDLCEKKYKTQWALQSHVRAAHMDERPHICDVCSKGFHTSRILRIHMRTHTGERPYVCQLCERAFTQKAALKTHMKIHSINLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -