Basic Information

Insect: Neoneuromus ignobilis
Gene Symbol: -
Assembly: GCA_029203775.1
Location: CP092088.1:5165612-5169460[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.015 1.3 10.5 3.2 1 23 306 328 306 328 0.98

2 14 4.6e-05 0.0037 18.4 0.3 1 23 345 367 345 367 0.98

3 14 8.9e-05 0.0072 17.5 2.6 1 23 373 395 373 395 0.99

4 14 0.00043 0.035 15.4 1.2 1 23 401 423 401 423 0.95

5 14 0.00065 0.053 14.8 0.4 1 23 430 452 430 452 0.97

6 14 1.8e-06 0.00014 22.9 2.5 1 23 458 480 458 480 0.98

7 14 0.00062 0.05 14.9 0.3 1 23 486 508 486 508 0.95

8 14 0.00045 0.036 15.3 0.4 1 23 515 537 515 537 0.97

9 14 9.1e-06 0.00074 20.7 1.4 2 23 544 565 543 565 0.97

10 14 0.0016 0.13 13.6 0.5 1 23 571 593 571 593 0.95

11 14 0.00073 0.059 14.7 0.3 1 23 600 622 600 622 0.97

12 14 0.00047 0.038 15.3 1.7 1 23 628 650 628 650 0.97

13 14 0.00058 0.047 15.0 0.3 1 23 656 678 656 678 0.97

14 14 0.0031 0.25 12.7 5.1 1 23 685 708 685 708 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.015	1.3	10.5	3.2	1	23	306	328	306	328	0.98
2	14	4.6e-05	0.0037	18.4	0.3	1	23	345	367	345	367	0.98
3	14	8.9e-05	0.0072	17.5	2.6	1	23	373	395	373	395	0.99
4	14	0.00043	0.035	15.4	1.2	1	23	401	423	401	423	0.95
5	14	0.00065	0.053	14.8	0.4	1	23	430	452	430	452	0.97
6	14	1.8e-06	0.00014	22.9	2.5	1	23	458	480	458	480	0.98
7	14	0.00062	0.05	14.9	0.3	1	23	486	508	486	508	0.95
8	14	0.00045	0.036	15.3	0.4	1	23	515	537	515	537	0.97
9	14	9.1e-06	0.00074	20.7	1.4	2	23	544	565	543	565	0.97
10	14	0.0016	0.13	13.6	0.5	1	23	571	593	571	593	0.95
11	14	0.00073	0.059	14.7	0.3	1	23	600	622	600	622	0.97
12	14	0.00047	0.038	15.3	1.7	1	23	628	650	628	650	0.97
13	14	0.00058	0.047	15.0	0.3	1	23	656	678	656	678	0.97
14	14	0.0031	0.25	12.7	5.1	1	23	685	708	685	708	0.95

Sequence Information

Coding Sequence: ATGCAACAAATTTTCCTAGTTTTGAACAAAAAGCAGTAccattttttgtattgttacgAAGATAGAATACGTAAAACACCGTCATTACGACAACTCTTAGCGACAAAATCTGAGCGAGATGACGATGGACTAAGTGcttcttataacatttttttactgattGCAAAGTCCGAAAAGCCCCTGTTCTCCGAAAAATCCGAATTTTCTATACGGCTTGACAAGTCAATTTTGCCAGGAAACGAAGCTTTGCTTTTAGCTTATgttTGTAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCGTGTGCTGAGTATTTGAAGACGTTCGCTGCTTTCCGCAATAAATGTATCGAAACAGAGTCTGCATTATGTGATTTCCTTCGAGATTCGCGCTTCGACATAGAAGTAAAAAAGGAACTGGAAGACAAGATAACAGTAATTGAAAAAGAATGTAGTTTTTCCATGCCGGAAAAGATTTCTTTTCGACAATGTTTACGAACCCATATCGATTCGCGCACAAAAGACGTCGATGAACCGAATATTGTAAAAGTTATAACCGAAGTAGACGATGAAGAAACTAATGACGAGCGTACGCAGTCATGTTTTTCTACATCGTACGAGAGAGGACCGGATGAAACTCTCAGAACGTATCTTTCGTTACAAGAATGTATTGATATCAAAGAGGACAACGAGGATTTTGTCGACGATGAGAACACGACGTCGGAATTATCGATCGACGTCGACGAACATTCGAGTTTTTCGAACTGGGCACAAAAGTTCTCTAGCGATACGACGAACGAATACGAACAAGTTTTGATCAAATGTAAATCGAGCGATGGGACATGCGTGACGGATTCGGACAACTGGGAAGATCGATCGTTAGAAAGTAGAAGAATTCGTTCAGGTGACGATTCGTTCACTTGCGACTCGTGCAGTGGGTCGTTCGAGACGAAGACACATTTCGACGAACATTTAAAAACACACTGCAAAGAAAAAGAAGATCTCTACGTGCACtcgaaaaaaaagaaaccgttCGTTTGCAATCTGTGCACGAAATCTTTCTTCCGCGCCGGCCGTTTGGCCGCGCACATGAACCTGCACATTGGCAATAAACCGTTCAAGTGCAACGAATGCGAGAAGTCGTTTACATGCGACGAATCTCTGGTCCGGCATATGAGAGTTCACACAGGTGAAAAACCATTCAAGTGCGATACGTGCGGCATGTCTTTCGTTAAGAAATTTAGTTTAGTCCAACACTCCTACGTGCACtcgaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCGTTCGTCAAAGCCGATCGTCTGGCCACGCACAAGAATATGCACTTCGGCAGAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcgtCCAAAACAAATCTGGGTAAGCATAAGAAAGTTCACACGACTGAAAAACCATTCAGGTGCGACACGTGCGGCATGGCGTTCGCTGTAAAAACTAGTTTAGTCAAACACTCCTacgtgcattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCACCGATCTTCTGGCCGCGCACAAGAATATGCACCTCGGCAAAAAACCAATCAAGTGcaacgaatgcgaaaagtcgttttcgtCCAAAACAAATCTGGGTCAGCATAAGAAAGTTCACACGACTGAAAAACCATTCAAGTGCGACACGTGCGGCATGGCGTTCGCTCTAAAATTTACTTTAGTCAGACACTCCTacgtgcattccaaaaaaaagaaaccgtACGCGTGCGATCTGTGCACGAAAACGTTCATCACCACCGAGCGTCTGGCCGCGCACAAGAATATGCACCTTGGCAAAAATCCGTTCAAATGcaacgaatgcgaaaagtcgtttttGTCCAACGTCTATCTCAACAGACACAAGACAGTTCACACGGGCGAAAAACCTTTCGTGTGCGGCGTGTGCGGTGCCGCATTTAAACTGAAAGAATATTTGCTGAAACATACATATCGTCATACCGGACAACAAATGCCGCATCAGTGTGAAATGTGCGAAAAATCGTATTTCCACAAAAGCAGATTGAAAACGCATCAGGAACAAgctcataaaataaataccgaTTGA
Protein Sequence: MQQIFLVLNKKQYHFLYCYEDRIRKTPSLRQLLATKSERDDDGLSASYNIFLLIAKSEKPLFSEKSEFSIRLDKSILPGNEALLLAYVCKNERLSSFICHSCAEYLKTFAAFRNKCIETESALCDFLRDSRFDIEVKKELEDKITVIEKECSFSMPEKISFRQCLRTHIDSRTKDVDEPNIVKVITEVDDEETNDERTQSCFSTSYERGPDETLRTYLSLQECIDIKEDNEDFVDDENTTSELSIDVDEHSSFSNWAQKFSSDTTNEYEQVLIKCKSSDGTCVTDSDNWEDRSLESRRIRSGDDSFTCDSCSGSFETKTHFDEHLKTHCKEKEDLYVHSKKKKPFVCNLCTKSFFRAGRLAAHMNLHIGNKPFKCNECEKSFTCDESLVRHMRVHTGEKPFKCDTCGMSFVKKFSLVQHSYVHSKKKKPFACDLCTKSFVKADRLATHKNMHFGRKPFKCNECEKSFSSKTNLGKHKKVHTTEKPFRCDTCGMAFAVKTSLVKHSYVHSKKKKPFACDLCTKSFFSTDLLAAHKNMHLGKKPIKCNECEKSFSSKTNLGQHKKVHTTEKPFKCDTCGMAFALKFTLVRHSYVHSKKKKPYACDLCTKTFITTERLAAHKNMHLGKNPFKCNECEKSFLSNVYLNRHKTVHTGEKPFVCGVCGAAFKLKEYLLKHTYRHTGQQMPHQCEMCEKSYFHKSRLKTHQEQAHKINTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -