Nign004124.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:6645971-6653769[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0071 0.58 11.5 1.1 1 23 245 267 245 267 0.98 2 15 0.00042 0.034 15.4 3.3 1 23 290 312 290 312 0.96 3 15 0.0066 0.54 11.6 0.9 1 23 319 341 319 341 0.98 4 15 1.5e-05 0.0012 20.0 2.9 1 23 347 369 347 369 0.97 5 15 0.0011 0.085 14.2 0.2 1 23 376 398 376 398 0.96 6 15 0.00015 0.012 16.8 3.1 1 23 404 426 404 426 0.99 7 15 1.5e-05 0.0012 20.0 0.6 1 23 432 454 432 454 0.97 8 15 5.8e-05 0.0047 18.1 0.5 1 23 461 483 461 483 0.97 9 15 0.0026 0.21 12.9 3.1 1 23 489 511 489 511 0.98 10 15 0.00066 0.054 14.8 1.6 1 23 517 539 517 539 0.98 11 15 3.4e-06 0.00028 22.0 1.7 1 23 545 567 545 567 0.98 12 15 7.2e-05 0.0059 17.8 1.5 1 23 573 595 573 595 0.95 13 15 0.00025 0.02 16.1 0.6 1 23 602 624 602 624 0.97 14 15 0.00046 0.037 15.3 1.8 1 23 630 652 630 652 0.98 15 15 0.003 0.24 12.7 0.5 1 23 658 680 658 680 0.96
Sequence Information
- Coding Sequence
- ATGTATCCGTATGAAGTGTGCAAAGGGTTAAGAAATCTGGCAAAAAAAGTTCATCTAGCGACTTTGATGACACTTCGGgttTGTAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCATGTGCTGAGTATTTGAAGACGTTCACTGCTTTCCgcaataaatgtattgaaacaGAGTCTGCATTATGTGATTTCCTTCGAGATTTGCGCTTCGACATAGAAGTAAAAAAGGAACTGGAAGACAAGATAACAGTAATTGAAAAAGAATGTAGTTTTTCCATGTCGGAAAAGAATTCTTTTCGACAATGTTTACGAACCCATATCGATTCGCGCACAAAAGACGTCGATGAACCGAATATTGTAAAAGTTAAAACCGAAGTAGACGATGAAGAAACTAATGACGAGAGAACGCAGTCATGTTTTTCTACATCTTACGAGAGAGGATTGGATGAAACTCTCAGAACGTATCGTTCGTTACAAGAATGTATCTATATCAAAGACGACAACGAGGATTTTGTCGACGATGAGAACACGACGTCAAAAGTATCGATCGACGTCTACGAACGTTCGAGTTTTTCGAACTCGGCACAAAAGTTCTCTAGCGATACGACGAACGAATACGagcaagttttaattaaatgcgAATCGAGTGATGGGACATGCGTGACGGATTCGGACAACTGGGAAAATCAGTCATTAGAAAGTAGAAGAATTCGTTCAGGTCACGATTCGTTCACTTGCGACTCGTGCAATGGGTCGTTCGAGACGAAGACACGTCTCGACGAACATTTAAAAACACACTGCGAAGGAAAAGAAGATCTTGTCTGTCGACGAGCGACTAAGAACGTCGACGTCTCCGATAGACCGTTTCCATGCGATCGATGCAAAATGTCGTTCATGAGGAGAAGTGAGTTGTGCAATCACATGTACCTCCATACTGGTGCGATGAGACCGTTCAAGTGCGACTTATGCGAAAAATCGTTTCTCACCAACACACTTATGGTCGAGCATAAGAGAGTTCACACGAGTGAAAAACAGTTCAAGTGCAACACGTGCGGCATGTCGTTCGTTACGAAACATAATTTAAGCATACACTACTATGTGCACtcgaaaaaaaagaaaccgttCGCGTGCGATTTGTGCACAAAATCTTTCTTCAACGCCGGGCGTCTGGCCGCGCACAGAAACCTGCACATTGGCAAAAAACCATTCAAGTGCAATgaatgcgaaaagtcgttttcaTGCGACACATCTCTGGTCCGGCATATGAGAATTCACATGGGTGAAAAACCATTCAAGTGCGATACATGCGGATTGTCATTCGTTGAGAAATCTAATTTAGTCCAACACTACTacgtgcattccaaaaaaaataaaccgtTCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCTCCACGCAACTGGCCGCGCACAGGAATGTGCACATCGGGAAACAACCGTTTAAGTGCGACGAATGTGAAAAGTCATTTTCGTGCAACACAGTTCTGGTCCGGCATAAGAGAGTTCACACGGGTGAAAACCCGTTCAAGTGCgacgaatgcgaaaagtcgttttcgtgCAACGCACTTCTTGTCGAGCATAAGAGAGTTCACACGGGTGAAAAACCTTTCAAGTGcaacgaatgcgaaaagtcgttttcgtCCAACACAAATCTGGGTCAGCATAAGAAAGTTCACACGGGAGAAAAACCGTTCAAGTGCGACACGTGCGGCATGTCGTTCAGTAAAAAAAGTAGTTTAGACCAACATTCATacgtgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCACCACGCAATTGGCTGCGCACAGGAACGTTCACCTTGGCAAAGAACTGTTCAAGTGCgacgaatgcgaaaagtcgttttcgtgCAATGGCGATCTCAACGATCACAAGATGATTCACGCGAACAATAAAGCGTTCCCGTGCGACAAGTGCAGCTCGACGTTCGTGCAGAAAAAACAGTTGCTGGAACATTCGATTGTTCATACATTCAAGAAGCCGTTTCCGTGA
- Protein Sequence
- MYPYEVCKGLRNLAKKVHLATLMTLRVCKNERLSSFICHSCAEYLKTFTAFRNKCIETESALCDFLRDLRFDIEVKKELEDKITVIEKECSFSMSEKNSFRQCLRTHIDSRTKDVDEPNIVKVKTEVDDEETNDERTQSCFSTSYERGLDETLRTYRSLQECIYIKDDNEDFVDDENTTSKVSIDVYERSSFSNSAQKFSSDTTNEYEQVLIKCESSDGTCVTDSDNWENQSLESRRIRSGHDSFTCDSCNGSFETKTRLDEHLKTHCEGKEDLVCRRATKNVDVSDRPFPCDRCKMSFMRRSELCNHMYLHTGAMRPFKCDLCEKSFLTNTLMVEHKRVHTSEKQFKCNTCGMSFVTKHNLSIHYYVHSKKKKPFACDLCTKSFFNAGRLAAHRNLHIGKKPFKCNECEKSFSCDTSLVRHMRIHMGEKPFKCDTCGLSFVEKSNLVQHYYVHSKKNKPFACDLCTKSFFSSTQLAAHRNVHIGKQPFKCDECEKSFSCNTVLVRHKRVHTGENPFKCDECEKSFSCNALLVEHKRVHTGEKPFKCNECEKSFSSNTNLGQHKKVHTGEKPFKCDTCGMSFSKKSSLDQHSYVHSKKKRPFACDLCTKSFFSTTQLAAHRNVHLGKELFKCDECEKSFSCNGDLNDHKMIHANNKAFPCDKCSSTFVQKKQLLEHSIVHTFKKPFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -