Nign018627.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- su(Hw)
- Assembly
- GCA_029203775.1
- Location
- CP092093.1:10646946-10650381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9 7.3e+02 1.8 0.1 2 21 27 45 26 46 0.81 2 13 7e-05 0.0057 17.9 2.8 1 23 123 146 123 146 0.97 3 13 0.5 40 5.7 0.8 2 23 154 176 153 176 0.93 4 13 1.8e-05 0.0014 19.7 1.4 1 21 192 212 192 213 0.95 5 13 1.6e-06 0.00013 23.0 1.0 2 23 225 246 224 246 0.96 6 13 0.00083 0.067 14.5 1.3 1 23 256 278 256 278 0.99 7 13 1.4e-06 0.00012 23.2 0.8 1 23 284 306 284 306 0.98 8 13 1.3e-05 0.001 20.2 0.7 1 23 312 334 312 334 0.99 9 13 1.3e-06 0.0001 23.4 3.0 1 23 340 362 340 362 0.95 10 13 0.00012 0.01 17.1 1.8 1 23 368 391 368 391 0.95 11 13 0.00014 0.012 16.9 1.1 1 23 397 419 397 419 0.96 12 13 1e-06 8.3e-05 23.6 3.3 1 23 425 447 425 447 0.98 13 13 2.6e-05 0.0021 19.2 4.8 2 23 454 476 454 476 0.96
Sequence Information
- Coding Sequence
- ATGGCAAGTAAAACAAAATCAGGTGATTCAGTTGAGGTACTAACAAAAGTAGAAATTTTGGATGAAGTGAAAATGCTTGAATGTTCCAAATGTAATGTTACTGTAATTTCATTTAATTTAGATGATCATATGAAAAAATGTGAAGGACCTGATGAACTACCAGAAGAATTACGTTTTGATGAATATGAATTGGATCAAGACAATGAAGAAATAGAAAACTTAGAAGAACAAGATGAGGAAAAGGAAGAAACTCAAAAAGAAGCTTTGgagtatgaaatatttattaaaatgtatgaaaaaattgattttaagaaGAATTGTTTCTGTTGTTTAGAATCACTTCGGACCAGTCATAAgAATGGGAAATTTGAATGTAGTAATTGCAGTAAGAAATttcataataacaataatttattattacatcaaCGGATTATTCATGAAACTGGTACAAATTTACTAAAATGTAGTTTATGCGATTCATGTTTTCTTGAATCAAAAGATTTAATTGAACACATTACTAATATACATCAAGAAGAAATACAAAGAGCTTCAGAAACagcttCAAAGGATTCTTATGTATGTGAGCCTTGCCAAAAGACATTTACTAGAAAATATCATCTTGAAAGACACATTAAACAAACTGGATGTGATGGAAAACCTCGTCCTACTTTACCTTGCCagatatgttTTAAGAAATTTACAAGAAAAGATAATTTACGTGAACATTTAAGGGCACATATGGGAATTGTTAAACGTAAAAAACAGTTCACATGTGAAATTTGTCTTAAACAGTTTTCAAGTGCTCATATTCTTGAAGTTCATACAAGAACACATACGggtGAAAGACCATATCATTGTGATATGTGTCCTAAAGCATTTCCATCTAATGGAGCGTTAACTAAACATCGTAGAATGCACACAGGAGAAAAACCTTACGAATGTAATgttTGTCAAAGAAAATTTGCTGCAAAAGAGACATTAAATAGACACACACGCATTCACACAGGAGTCAAACCTCATGAATGTACTTACTGtggaaaaacatttattcaagCTTCACAACTTCGAGCACATATTTTTCACCACACAGGTGAACATGGATATCATTGTGATTATTGTGGCAAAGCATTTAATAGACGAATTCGGTTGGTGACACATGTTCGTTTTGTACATGAAGGTGCTACACCCTATAGATGTAAATTGTGTAAAGCAAAATTTGTAAGAAAAGAGGATTTAAGTCGACATGAGCTTTTGCATTCAGGAGAAAAacCACATAAATGCCCTGAATGTGATAAATGTTTTGCTGTAAAATCATCGATGAAAGTTCATATGCTTACTCATCGTAAAGAAGAACCTCGTTCCTGTCATCGATGTGGTCGTGCTTTTATTCGCCAAGATTGTTTAGTAAGACATATGCGTTCAAAACATAGAGATTTGCTTGAAGATATCATGTCTAATGCAGAACGCAAGCGCTTACAAAGTCGACTTTTAGAAGTTACATCTCTAAGTGAAACAACTTTAGATGAGGATAAACCTCAACTTTGGTCTGATATTCGTCTTGTTGAACagataaaagaattattactaCTTCTAGTTGATGAAGAAACTTTAAATACTTTTGGTTGGCCTGATTCAccaatagataaaataatggaTGCTGTTATTGTTCGTTGTGGTCATAAACCTATTTCTGGTGAGAAATTTGACTATGTTGGAAGattaagagaaaatataaaacttttatttatgacaattattgatgaaaaatcTATGAAAACGGTATTGAATAACCATACAGTAGATGAAATGATACAACATATTCTAAAACTTGCCAAAAGTGATTAg
- Protein Sequence
- MASKTKSGDSVEVLTKVEILDEVKMLECSKCNVTVISFNLDDHMKKCEGPDELPEELRFDEYELDQDNEEIENLEEQDEEKEETQKEALEYEIFIKMYEKIDFKKNCFCCLESLRTSHKNGKFECSNCSKKFHNNNNLLLHQRIIHETGTNLLKCSLCDSCFLESKDLIEHITNIHQEEIQRASETASKDSYVCEPCQKTFTRKYHLERHIKQTGCDGKPRPTLPCQICFKKFTRKDNLREHLRAHMGIVKRKKQFTCEICLKQFSSAHILEVHTRTHTGERPYHCDMCPKAFPSNGALTKHRRMHTGEKPYECNVCQRKFAAKETLNRHTRIHTGVKPHECTYCGKTFIQASQLRAHIFHHTGEHGYHCDYCGKAFNRRIRLVTHVRFVHEGATPYRCKLCKAKFVRKEDLSRHELLHSGEKPHKCPECDKCFAVKSSMKVHMLTHRKEEPRSCHRCGRAFIRQDCLVRHMRSKHRDLLEDIMSNAERKRLQSRLLEVTSLSETTLDEDKPQLWSDIRLVEQIKELLLLLVDEETLNTFGWPDSPIDKIMDAVIVRCGHKPISGEKFDYVGRLRENIKLLFMTIIDEKSMKTVLNNHTVDEMIQHILKLAKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -