Nign004010.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092088.1:5563598-5593549[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.029 2.3 9.6 1.0 1 23 304 326 304 326 0.98 2 23 0.0095 0.77 11.1 3.3 1 23 349 371 349 371 0.96 3 23 0.026 2.1 9.8 3.2 1 23 378 400 378 400 0.98 4 23 0.00015 0.012 16.8 3.2 1 23 406 428 406 428 0.95 5 23 0.0026 0.21 12.9 0.4 1 23 435 457 435 457 0.96 6 23 7.6e-06 0.00061 20.9 2.0 1 23 463 485 463 485 0.98 7 23 0.00028 0.023 16.0 0.4 1 23 491 513 491 513 0.98 8 23 0.16 13 7.3 0.2 1 17 518 534 518 535 0.88 9 23 0.00022 0.018 16.3 3.5 1 23 546 568 546 568 0.99 10 23 0.0075 0.61 11.5 1.6 1 23 1126 1148 1126 1148 0.98 11 23 0.1 8.5 7.9 0.6 1 23 1165 1187 1165 1187 0.97 12 23 0.0011 0.088 14.1 4.0 1 23 1193 1215 1193 1215 0.99 13 23 0.00045 0.037 15.3 3.2 1 23 1221 1243 1221 1243 0.95 14 23 0.0019 0.15 13.4 0.2 1 23 1250 1272 1250 1272 0.97 15 23 0.0033 0.27 12.6 1.6 1 23 1278 1300 1278 1300 0.98 16 23 0.0066 0.53 11.7 1.0 1 23 1306 1328 1306 1328 0.95 17 23 0.0058 0.47 11.8 0.6 1 23 1335 1357 1335 1357 0.96 18 23 0.0016 0.13 13.6 3.9 1 23 1363 1385 1363 1385 0.99 19 23 3.2e-05 0.0026 18.9 3.4 1 23 1391 1413 1391 1413 0.95 20 23 2.5 2e+02 3.5 1.5 1 23 1420 1442 1420 1442 0.88 21 23 1.9e-05 0.0015 19.6 1.1 2 23 1485 1506 1484 1506 0.96 22 23 0.016 1.3 10.4 0.4 1 23 1512 1534 1512 1534 0.95 23 23 0.0018 0.14 13.5 7.3 1 23 1541 1564 1541 1564 0.96
Sequence Information
- Coding Sequence
- ATGAGCGGCTTTGAAGATAGGCCGAACGAAAGTAGCGatagtatgaaaaatttatcCTTAAGAAGTTTACAGAGGCTCAAGAAGTCCCACAAAAAAAGTTCATCTAGCGACTCTGATGACACTTCAAaaatgaatataaCAAATGTTCCTGATTTGCAGAACTTATGTAGAACATGTTTATCGCAACATAACAACGCTTCTGACATATTCAGTGGAAAGTGTTTCAACGAAAAAACGTTCAGTGAAGTGTTAATGGAATACGCTTCGATACAAgtTTGTAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCATGTGCTGAGTATTTGAAGACGTTCGCTGTTTTCCGCAATAAATGTATCGAAACAGAGTCTGCATTATGTGATTTCCTTAGAGATTCACGCTTTgacataaaagtaaaaaaggAACCGGAATGTAGTTTTTCCAtgctgaaaaaaatatcttttcaacaATGTTTACGAACTGATATCGATTTGTGTACAAAAAACGTCGATGAACTGAATATTGTAAAAGTTAAAACCGAAGTAGACGATGAAGAAATTAATGACGAGAGTACGCAGTCATGTTTTTCTACATCGAACGAGAGAGGATCGGATGATACTCTCAGAACGTATTTTTCGTTACAAGAATCTATTGATATCAAAGAGGAGAATGAGGATTTTGTCGATGATGAGAACATGACGTCGGAAGTATCGATCGACATCGACGAACATTCGAGTTTTTTGAATTCTGTACAAAAGTTCTCTAGCCATACGACGAACGAATGCGAGGAAGTTTTGCTCGTAGTCGTTCAATGTGAAGCGAGCGATGGTACATGCGTGACGGATTCGGAGAACTGGGAAGATCAATCATTAGAAAGTAGAAGAATTCGTTCAGGTCACGATTCGTTCACTTGCGACTCATGCAATGGGTCGTTCGAGACGAGGACACGTCTCGACGAACATTTAAAAACACACTGCGAAGGAAAAGAAGATCTCGTCTGTCGACGACCGACTAAGAACGTCGACGTCTCCGATAGACCATTTCCATGCGATCGATGCAAAATGTCGTTCATGGAGAGACGTCATTTGCGCAATCACATGTATCTCCATACTGGCGAGAAGAGGCCGTTCACGTGCGACTTATGTGAAAAGTCGTTTTTGTACAAAATGCATCTGGTCCAGCATAAGAAAGTTCATACGGGTGAAAAACTGTTCAAGTGCGACACGTGCGGCAAGTCGTTCAATACAAAACGTCATTTAGACATACACTCCTacgtgcattccaaaaaaaagaaaccgtATGCTTGCGATCTGTGCACGAAATCTTTCTTCAGCACCGGGAGTTTGGTCGCGCACAAGAACTTGCACATTGGCAAAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcgtCCAAAGCATTTCTGGTCCGGCATAAGAAAGTTCACACGGGTGAAAAACCATTCATGTGCGATAAGTGCGGCATTTCGTTCATTGAGAAATATAGCTTAGACCAGCACTACAACGTGCATTCCAAAAAACCGTTCGAGTGCGATCTGTGTACGAAATCGTTTTACAGCACCGCGCTTCTGACCGCGTACAGGAACCTGCACCTTGGCAAAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcgtgCAACGCCAGTCTCAATAATCACAGGAGAATTCATTCGAACGAGAGAGCATTCCCGTGCGACAATATTGCAGTTGATGGAAGTACCGATATAAATAGTATTGGTAGGCTTACAGTAATTATTAGATTTGCATCAATAAATAGCTCGAATGTCAATGAAGAACTATGCGTTCTTGCTTCCATGAATGACACGACCAAAGGCACTGATATTTTTCGTCAAGTACAAGAGTTTACAAATTTCGAAAATGGGCAAGTATtggatttaaaaagtaaattgttttcCATAACAACTGATGGTGCTCCAAAAAGCGATAGTGAAGaggagaatattataaataagcgtCCAGGACAGAAAAGAAAGAGAGTTTTATTGACATCCGAAAGTGAGACAGATTTAGAGGATCAACGCATCGAAACAGCTGCTGATGGAACAGTCTGGGAAGAAATAAACGGAAGTCCCAAACCTGGCAGGTTACCAgtgcataatatttttagggATATGTCAGGGCCAACAGGATATGCTAAACGACATATAATGAAAGGACAAATGAAGACGGCATTTACTCTTACCGTTGATCAGCGTATAAtgcatcatattataaaatgtacagaagAAGAAGCATTTAGGGTGTTGGGGACTAAGTGGGAGCTAAATGCAACAAAACTAGACGCATTTGGTGTAGATGTGGCAGACCAGATGGCAAGGAAATACAGCGTGAAGTCGAAAAGTTGTAGGTGGCCACTTcagTCTGAAAAGCAGTACACCATTGGCGAAGAACTTATTCTATCAGCTGTAAGTGAGATAATATGCACCGTGCTGCATAAACCAGCTTTCGATATTATTATAAGAAGAATTCCATTAAGTAATAATACAGTACGAAGAATGATTGACGAAATGGGAAACGAAGCTTTGCTTTTAGCTTATGTGAGATttgtaaaagaagaaaaaattttCGAACAATTGTTATTTGCCAAATGTTTACAAACTGATACGAAAGgtgaaacaatatttaataaattaaaaagatttttcgaTGTAAAAGCTATACCCTCGAGTAAAATCCTCTCCGTTGCTACTGAGGGTGCTCCGGCAATAACAGGAGGACACCGAGACTCTCTGACATACTCAAAACAAGCTATACCGAATgttTATAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCGTGTGCTGAGTATTTGAAGACGTTCGCTGCTTTCCGCAATAAATGTATCGAAACAGAGTCTGTATTATGTGATTTCCTTCGAGATTCACGCTTTGACATAGAAGTAAAAAAGGAACCGGAAGACAAGATAACAGTAATCGAAAAAGAATGTAGTTTTTCCATGCCGGGAAAAAATTCTTTTCGACAATGTTTACGAACCGATATCGATTCGTGTACAAAAAACGTCGATGAACCGAATATTGTAAAAGTTAAAACCGAAGTAGACGATGAAGAAACTAATGACGAGAGTACGCAGTCATGTTTTTCTACATCGTACGAGAAAGAACCGGATGAAAATCTCAGAACGTATCTTTCGTTACAAGAATCTATTGATATCAAAGAGGACAACGAGGACATTGTCGACGATGAGAACACGACGTCAGAAGTACCGATGGACGTAAGAGAGACACGCGCGACAGATTCGGACAAGTGCGAAGGTCGATCGTTAGAAAGTAGAAGAATTCGTTCAGGTCACGATTCGTTCACTTGCGACTCGTGCAGTGGATCGTTCGAGACGAAGACACATCTCGacgtacatttaaaaatacactgcGAAGGAAAAGAAGATCTTTACGTGCACtcgaaaaaaaagaaaccgttCCCGTGCGATCTGTGCACGCAATCTTTCTTCGGCGCCACGCGTCTGTCCATGCATAGGAACATGCACTTCGGCAAAAAACCGTTCAAGTGcaacgaatgcgaaaagtcgttttcaTGCAACACACTTTTGGTCCGGCATAAGAGAGTTCACACTGGTGAAAAACCCTTTATGTGCGACACGTGCGGCATGTCGTTCAAAACAAAACATAATTTAGACCAACACTTCTacgtgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCGCCGGGCGTCTGGCCGCGCACAGGAACATTCACCTCGGCAAAAAGCTGTTCATGTGCgacgaatgcgaaaagtcgttttcgtgCAACACACTTTTGGCCGTGCATAAGAGAGTTCATACGAGTGAAAAACCATTCAAGTGCGACTCGTGCAGTAGAGCGTTCACTATGAAAGCTACTTTAGTCAAACACTCCTacgtgcattccaaaaaaaagaaaccgttCGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCACCACGCTACTGGCCGCGCACAAGAACCTGCACATTGGCAAAAAACCATTCAAGTGCAGcgaatgcgaaaagtcgttttcgtgCAACACACTTTTGGTCCGGCATAAGAGAGTTCACACTGGTGAAAAACCCTTTATGTGCGACACGTGCGGCATGTCGTTCAaaacaaaacataatttaaaccgacactcctacgtgcattccaaaaaaaagaaacctTTCGCGTGCGATCTGTGCACGAAATCTTTCTTCTGCACCACGGTACTGGCCGCGCACAGGAACGTCCACCTCGGCAAACAACCGTTCAAAGAGcttgaatattttgaattccCGTACGATAAGTGCAGCTCGTCGTTCGTGCGGAAAAAACTATTGCTGGAATATTCGGTCGTTCATACCGGCAAGAGGCCGTCTTCGTGCGACATCTGCGACAAGTCGTTTTCGAACAACGCGCGTCTCCAGAACCACAAGAGACTGCACACGGGCGAAAAACCTTTCGTGTGCGGTGTGTGCAGTGCCGCGTTTAGACTGAAAGTGTATTTGCGGAAACATACGTATCTTCATACCGGACAGAAAATGCCTCATCAGTGTGAAATGTGCGAAAAATCGTATTTCCATAAACACGAATTAAAAAGGCATCAAGAGCGAGTCCATGATTTAAAAACCGAATGa
- Protein Sequence
- MSGFEDRPNESSDSMKNLSLRSLQRLKKSHKKSSSSDSDDTSKMNITNVPDLQNLCRTCLSQHNNASDIFSGKCFNEKTFSEVLMEYASIQVCKNERLSSFICHSCAEYLKTFAVFRNKCIETESALCDFLRDSRFDIKVKKEPECSFSMLKKISFQQCLRTDIDLCTKNVDELNIVKVKTEVDDEEINDESTQSCFSTSNERGSDDTLRTYFSLQESIDIKEENEDFVDDENMTSEVSIDIDEHSSFLNSVQKFSSHTTNECEEVLLVVVQCEASDGTCVTDSENWEDQSLESRRIRSGHDSFTCDSCNGSFETRTRLDEHLKTHCEGKEDLVCRRPTKNVDVSDRPFPCDRCKMSFMERRHLRNHMYLHTGEKRPFTCDLCEKSFLYKMHLVQHKKVHTGEKLFKCDTCGKSFNTKRHLDIHSYVHSKKKKPYACDLCTKSFFSTGSLVAHKNLHIGKKPFKCNECEKSFSSKAFLVRHKKVHTGEKPFMCDKCGISFIEKYSLDQHYNVHSKKPFECDLCTKSFYSTALLTAYRNLHLGKKPFKCNECEKSFSCNASLNNHRRIHSNERAFPCDNIAVDGSTDINSIGRLTVIIRFASINSSNVNEELCVLASMNDTTKGTDIFRQVQEFTNFENGQVLDLKSKLFSITTDGAPKSDSEEENIINKRPGQKRKRVLLTSESETDLEDQRIETAADGTVWEEINGSPKPGRLPVHNIFRDMSGPTGYAKRHIMKGQMKTAFTLTVDQRIMHHIIKCTEEEAFRVLGTKWELNATKLDAFGVDVADQMARKYSVKSKSCRWPLQSEKQYTIGEELILSAVSEIICTVLHKPAFDIIIRRIPLSNNTVRRMIDEMGNEALLLAYVRFVKEEKIFEQLLFAKCLQTDTKGETIFNKLKRFFDVKAIPSSKILSVATEGAPAITGGHRDSLTYSKQAIPNVYKNERLSSFICHSCAEYLKTFAAFRNKCIETESVLCDFLRDSRFDIEVKKEPEDKITVIEKECSFSMPGKNSFRQCLRTDIDSCTKNVDEPNIVKVKTEVDDEETNDESTQSCFSTSYEKEPDENLRTYLSLQESIDIKEDNEDIVDDENTTSEVPMDVRETRATDSDKCEGRSLESRRIRSGHDSFTCDSCSGSFETKTHLDVHLKIHCEGKEDLYVHSKKKKPFPCDLCTQSFFGATRLSMHRNMHFGKKPFKCNECEKSFSCNTLLVRHKRVHTGEKPFMCDTCGMSFKTKHNLDQHFYVHSKKKRPFACDLCTKSFFSAGRLAAHRNIHLGKKLFMCDECEKSFSCNTLLAVHKRVHTSEKPFKCDSCSRAFTMKATLVKHSYVHSKKKKPFACDLCTKSFFSTTLLAAHKNLHIGKKPFKCSECEKSFSCNTLLVRHKRVHTGEKPFMCDTCGMSFKTKHNLNRHSYVHSKKKKPFACDLCTKSFFCTTVLAAHRNVHLGKQPFKELEYFEFPYDKCSSSFVRKKLLLEYSVVHTGKRPSSCDICDKSFSNNARLQNHKRLHTGEKPFVCGVCSAAFRLKVYLRKHTYLHTGQKMPHQCEMCEKSYFHKHELKRHQERVHDLKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -