Nign023016.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Neoneuromus ignobilis
Gene Symbol
-
Assembly
GCA_029203775.1
Location
CP092094.1:32549219-32553285[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.024 2 9.9 1.1 1 23 341 363 341 363 0.98
2 17 0.015 1.2 10.5 3.5 1 23 391 413 391 413 0.96
3 17 6.4e-06 0.00052 21.1 0.5 1 23 420 442 420 442 0.98
4 17 5.6e-05 0.0045 18.2 0.8 1 23 448 470 448 470 0.95
5 17 0.0013 0.11 13.8 0.7 1 23 477 499 477 499 0.97
6 17 6.3e-07 5.1e-05 24.3 2.6 1 23 505 527 505 527 0.99
7 17 0.0031 0.25 12.7 0.4 1 23 533 555 533 555 0.91
8 17 0.0013 0.11 13.8 0.7 1 23 562 584 562 584 0.97
9 17 0.00061 0.049 14.9 2.6 1 23 590 612 590 612 0.98
10 17 7.5e-07 6.1e-05 24.1 1.6 1 23 618 640 618 640 0.99
11 17 0.13 10 7.6 4.7 1 23 646 668 646 668 0.97
12 17 5.6e-05 0.0045 18.2 0.8 1 23 674 696 674 696 0.95
13 17 0.0013 0.11 13.8 0.7 1 23 703 725 703 725 0.97
14 17 1.4e-06 0.00011 23.2 0.8 1 23 731 753 731 753 0.99
15 17 0.00011 0.0087 17.3 0.7 1 23 759 781 759 781 0.91
16 17 0.0013 0.11 13.8 0.7 1 23 788 810 788 810 0.97
17 17 0.0023 0.19 13.1 4.9 1 23 816 838 816 838 0.98

Sequence Information

Coding Sequence
ATGCAACAAATTTTCCTAGTTTTGAACAAAAAGCAGTAccattttttgtattgttacgAAGATAGCGTACGTAAAACACCGTCATTACGACAACTCTTAGCGACAACATCTGAGCGAGATGACGATGGACTAAGTGcttcttataacatttttttactgattGCAAAGTCCGAAAAGCACCGATTCTCCGAAAAGTCCGAATTCTCTATACGACTCGACAAGTCATTTTTGCCGGGAAACGAAGCTTTGCTTTTAGCTTATGTGAGATttgtaaatgaagaaaaaatttcCCAACAATTGTTATTTGCCAAATGTTTACAAACCGATACGAAAGGAGGACACCGAGGCTCTCTGGCATACTCGAAACAAGCTATTCCGAATGTATTATCTGTACATTATGCCATTCATCGGCAAAATTTAGTCGCCGAAAATCTTAGTGAACGCTTTCGGTTTGTAGTGgttTGTAAGAATGAAAGATTATCGTCGTTCATCTGCCATTCGTGTGCTGAGTATTTGAAGACGTTCGCTGCTTTCCGCAATAAATGTATCGAAACAGAGTCTGCATTATGTGATTTCCTTCGAGATTCGCGCTTCGACATGGAAGTAAAGAAGAAACCGGAAGACAAGATAACAGTAATCGAAAAAGATTGCAGTTTTTCCATAcaggaaaaaatatcttttcgacAATGTTTACGAACCGATATCGATTCGTGTATAAAAAACGTCGATGAACCGGATATCGTAAAAGTTAAAACCGAAGTAGACGACGAAGAAACTAATGACGAGAGAACGCAGTCATGTTTTTCTACATCGTACGAGAGAGGATCGGATGAAAATCTCAGAACGTATCTTTCGTTACAAGAATCGATCGATATCAAAGAGGACAACGATGATTTTGTCGACGATGAGAAAACGACGTCGGAAATACCGATCGACGCGAGAGAGGCACGCGCGACGGATTCGGACGACTGGGAAGATCGATCGTTAGAAAGTAGAAGAATTCGTTCAGGTCACGATTCGTTCACTTGCGACTCGTGCAGTGGGTCGTTCGAGACGAAGACACGTCTCGACGAACATTTAAAAACACACTGCGAAGGAAAAGAAGATCTCCGTGCTACGAAGTCGCGCCGTCGACGAGCGACTAAGAACGTCGACGTCTCCGATAGACCGTTTCCATGCGATCGATGCAAAATGTCGTTCTTGACGAGACATCAGTTACGCAATCACATGTACCTCCATACCGGCGAGAAGAAACCGTTCACGTGTGACTTATGTGAAAAGTCGTTTTCGAGCAACGCACTTCTGGTCCAGCATAAGAGAGTTCACACAggtaaaaaaacattcaagtgCGACACGTGCGGCATGTCGTTCGCTACGAAAAGTAGTTTAGACCAACATTCCTacgtgcattccaaaaaaaagaaaccgtACGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCAACGAGCGTCTGGACGCACACAGGAATATGCACATTGGCAACAAACCATTCAAGTGcaacgaatgcgaaaagtcgttttcgAGCAACGCCCATCTGATCCAGCATAAGAGAGTTCACACAggtaaaaaaacattcaagtgCGACACGTGCGGCATGTCGCTCGCTACGAAAAGTAGTTTAGACCAACACTCCTACGcgcattccaaaaaaaagaaaccgtACGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCAACGAGCGTCTGGACGCACACAGGAATATGCACATTGGCAATAAACCATTCAAGTGcaacgaatgcgaaaagtcgttttcgtgCAACGCACTTCTGGTCCAGCATAAGAGAGTTCACACAggtaaaaaaacattcaaatgcAACTATtgcgaaaagtcgttttctCGCAACGCACTTCTGGTCCAGCATAAGAGAGTTCACATTGGCAATAAACCATTCAAGTGcaacgaatgcgaaaagtcgtttttGTGTAACGCACATCTGGTCCAGCATAAAAGAGTTCACACAggtaaaaaaacattcaagtgCGACACGTGCGGCATGTCGTTCGCTACGAAAAGTAGTTTAGACCAACACTCCTacgtgcattccaaaaaaaagaaaccgtACGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCAACGAGCGTCTGGACGCACACAGGAATATGCACATTGGCAACAAACCATTTAAGTGcaacgaatgcgaaaagtcgttttcgAGCAACGCACTTCTGGTCCAGCATAAGAGAATTCACACAggtaaaaaaacattcaagtgCGACACGTGCGGCATGTCGTTCGCTACGAAAAGTAGTTTAGACCAACACTCCTACGcgcattccaaaaaaaagaaaccgtACGCGTGCGATCTGTGCACGAAATCTTTCTTCAGCAACGAGCGTCTGGACGCACACAGGAATATGCACATTGGCAATAAACCATTCAAGTGCAAAgaatgcgaaaagtcgttttcgtgCAACACATATCTGGTCCAGCATAAGAGAGTTCACACGGGTGAAAGACCATTCGAGTGCGACAATGTCGCTCGTTACGAAAACTAG
Protein Sequence
MQQIFLVLNKKQYHFLYCYEDSVRKTPSLRQLLATTSERDDDGLSASYNIFLLIAKSEKHRFSEKSEFSIRLDKSFLPGNEALLLAYVRFVNEEKISQQLLFAKCLQTDTKGGHRGSLAYSKQAIPNVLSVHYAIHRQNLVAENLSERFRFVVVCKNERLSSFICHSCAEYLKTFAAFRNKCIETESALCDFLRDSRFDMEVKKKPEDKITVIEKDCSFSIQEKISFRQCLRTDIDSCIKNVDEPDIVKVKTEVDDEETNDERTQSCFSTSYERGSDENLRTYLSLQESIDIKEDNDDFVDDEKTTSEIPIDAREARATDSDDWEDRSLESRRIRSGHDSFTCDSCSGSFETKTRLDEHLKTHCEGKEDLRATKSRRRRATKNVDVSDRPFPCDRCKMSFLTRHQLRNHMYLHTGEKKPFTCDLCEKSFSSNALLVQHKRVHTGKKTFKCDTCGMSFATKSSLDQHSYVHSKKKKPYACDLCTKSFFSNERLDAHRNMHIGNKPFKCNECEKSFSSNAHLIQHKRVHTGKKTFKCDTCGMSLATKSSLDQHSYAHSKKKKPYACDLCTKSFFSNERLDAHRNMHIGNKPFKCNECEKSFSCNALLVQHKRVHTGKKTFKCNYCEKSFSRNALLVQHKRVHIGNKPFKCNECEKSFLCNAHLVQHKRVHTGKKTFKCDTCGMSFATKSSLDQHSYVHSKKKKPYACDLCTKSFFSNERLDAHRNMHIGNKPFKCNECEKSFSSNALLVQHKRIHTGKKTFKCDTCGMSFATKSSLDQHSYAHSKKKKPYACDLCTKSFFSNERLDAHRNMHIGNKPFKCKECEKSFSCNTYLVQHKRVHTGERPFECDNVARYEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-