Nign026841.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- AAEL002956
- Assembly
- GCA_029203775.1
- Location
- CP092096.1:15595234-15614017[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4e-06 0.00011 23.2 0.1 1 23 161 183 161 183 0.98 2 12 0.0062 0.5 11.7 0.0 1 23 189 211 189 211 0.98 3 12 3.3e-05 0.0027 18.9 3.5 1 23 217 239 217 239 0.98 4 12 0.00039 0.032 15.5 2.0 3 23 253 273 251 273 0.95 5 12 5.5e-05 0.0044 18.2 0.4 2 23 280 301 279 301 0.97 6 12 4.1e-06 0.00033 21.7 1.6 1 23 307 329 307 329 0.98 7 12 7.3e-06 0.00059 20.9 0.3 1 23 335 357 335 357 0.96 8 12 2.1e-05 0.0017 19.5 0.1 1 23 363 385 363 385 0.98 9 12 1.8e-06 0.00014 22.9 2.6 1 23 391 413 391 413 0.98 10 12 3.2e-05 0.0026 18.9 1.7 1 23 419 441 419 441 0.98 11 12 1.8e-06 0.00014 22.9 0.2 3 23 449 469 448 469 0.98 12 12 3.2e-07 2.6e-05 25.2 0.3 1 23 475 497 475 497 0.98
Sequence Information
- Coding Sequence
- ATGAAACCGTTATTTGGAGCCTGTTTAGATGAAATGCTTGTCTCGTTTGCTGGTATAAAAGTGGATCAAGGCGATGGATTACCAAATCTCATGTGTGTACAATGTGTCCTGCAATGCAGTCGTGCCTATACTTTCAAACAAATGTGCGAAAAATCAGATGTCACACTCAGACAATACATAAGTCCTGATTTTcagGCACAATTAGCACAAGCAATAGCTGATCAAGAAACCAAAAAAGAATTACAAGAACAGCTACAATTCAATCAGTTAGAAAATGTTGTTGAAATTGCAAAATTTGATGATGAAACCCAAGTTGAACTTGCTGAACAATTCATTACATATGCAGAAGAGAATGTTTGTGTCAACGAGgttAAAccagaattttatgaaatcaaaatGGAACAGGGTATTGAAGAAACCGTTGAAAATGGAATTCAAATACAAATGATTCAAGAGAGTACAGAAACTTCAAAAGGAAAATATCCATGTCCCAAATGTGATGAATCTTTTTCTCTTAAAGTTGATTTAAAGGTCCATATGATGTCTCATCCAAAAACAAATGATTATGTATGTGGAGTGTGTGAAAAAGGATTTCCTGAAGCACGGATATTAAAACGCCATTTGAAAATTCACCTTAAAAATAAACCTCATCaatgtaatatatgtaatatgacTTTTGCTGAAAGTTCAAATTTAAGTAAACACAAAAAGAAACACACTGGTGAATTGCGTAATATTAAAGGAAAACCACATCTGTGTTCTGTATGTGGCCGTGCTTTTAAATGGTCATCGAGTCTTTCTAAACACATGAAATATCATACTGGCCATAAACTACTCAgttgtaatatttgtaataagcAATATGTGGAGgcACGTAGTTTAAGAATACATATGAGGTCTCATACTGGAGAACGAccttatatttgtaatatatgccAGAAAGGATTCACACAACTTTGTAATTTAGAAAAACATGTCCGTATACATACAGGAGAAAAACCTTATCTGTGTACTACATGCGGCAAAGGttTCACACAATCTGGCTATGTTGCAATCCATATGAGAACTCATACTGgagaaaaaccttatatatgtACTACTTGTGGTAAAGGATTTGCTGGATCAAACACATTAGCAATACATTTACGTACACACACTGGGGAAAGACCGTATTCATGTAATACATGTGGAAAATCATTCAGCAGACATGAATCACTTGTAATCCATACCCGTTCTCATACTGGACATAAACCTCATGTATGCAGTGTATGCAGTAGAGGTTTTACATCATCTGGACACCTTGCAGGACACATGCGAAGTCATACAGGTGAAAAACCTCACGGTTGTGAAGTTTGTGGAAAAAGATTTTCAGGATCTAGTAGTTTAAAAGTACATATGAGAGGTCATTCTGGAGAAAAACCTTATGTTTGTAGATACTGTGGTAAAGCATTTGCCCAATCAAGTGCTTTAACTACACATTTGTCTACACATAcaggagaaaaaaataaaaggtcTGATACAGTTTCTATTGGACATATGACTTTAACGCATGCGTTGGATAATCCCCATGTTCATATAGACGTGAGGCACTTACCTCTTAGTCAAGCGTTTCATTTGTTGTTCGTGTGTGAGTGTCTTCTGTTCCTCATATTCAAGTCACTCCTCCCGTCTGAGAATGGCGCTATTTCGTATTTCGAATTTACGGTTTTCAGATACACAGATGCCTCCACCGATCTCAAAGCCGTTCTGGCAGCAAAAATTCCACAAGAAGTGGAAAGAGTTAAAAATTTCCGAAAGGAATATGGCAGTGTTAAAGTCGGAGAAGTATCTGTGGATATGATGTATGGTGGTATGCGAGGAATTAAAGGATTAGTGTGTGAGACATCTGTATTAGATCCAGATGAGGGTATTAGATTCCGAGGACTTTCAATTCCAGAATGCCAAAAAGTTCTTCCTAAAGCACCTGGTGGCAATGAACCACTCCCTGAAGGCCTATTTTGGTTGCTTATTACAGGCGAAGTACCTACAGAAGCTCAAGTTAGAGCAATCTCACATGAATGGGCAACACGTGCTTCTCTTCCAGCACATGTTGTAACTATGTTGAATAATTTTCCACAGTCATTACATCCCATGTCACAATTATCTTGTGCAGTAACAGCTTTAAATTTGGAAAGTAAATTTGCCAAAGCATATTCTGAAGGTGCTAGTAAAGCAAAATACTGGGAGTACACTTATGAAGACAGTATGGACTTAATTGCTAAATTACCAGTTATAGCTGCTACTATTTATTGTAACACCTATCGTGAGGAAGGTTCTCTAAAAATGCCTGCTCCTGATCCATCATTAGATTGGAGTGCTAATTTCTCTAGAATGTTGAAATTTGAAGATCcaacatttattgaattaatgcGACTTTATCTCACTATTCATAGTGATCATGAAGGTGGAAATGTATCTGCTCATACTGTACATTTAGTAGGTTCTGCATTAAGTGATCCTTACTTATCTTTTGCTGCTGGAATGAATGGTCTTGCTGGTCCATTACATGGATTGGCTAACCAAGAAgtgCTTATTTGGTTACAAAAAGTACGTAAAGAAATAGGAGATAATGTAACAGaagataaattaaaagattttgtaTGGAAAACATTAAAATCAGGACAAGTAGTCCCAGGCTATGGACACGCAGTTTTACGTAAAACTGATCCTCGATACACATGTCAGCGAGAATTCGCACTGAAACATTTACCTAATGATCCACTTTTCAAACTAGTTTCTAACATCTATAAAGTTGTTCCACCAATTCTTACAGAACTTGGAAAAGTGAAAAACCCATGGCCCAATGTTGATGCTCATTCTGGTGTTCTGTTACAGtattacggcctaaaagaaatgaattattacacTGTATTATTTGGAGTATCACGTGCATTGGGCGTTCTGGCATCTTTAGTGTGGGATCGTGCTCTTAGACTTCCAATAGAAAGACCCAAATCGTTGTCTACAGATGGACTAATAAAAGCATTGAAAAAGTAA
- Protein Sequence
- MKPLFGACLDEMLVSFAGIKVDQGDGLPNLMCVQCVLQCSRAYTFKQMCEKSDVTLRQYISPDFQAQLAQAIADQETKKELQEQLQFNQLENVVEIAKFDDETQVELAEQFITYAEENVCVNEVKPEFYEIKMEQGIEETVENGIQIQMIQESTETSKGKYPCPKCDESFSLKVDLKVHMMSHPKTNDYVCGVCEKGFPEARILKRHLKIHLKNKPHQCNICNMTFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWSSSLSKHMKYHTGHKLLSCNICNKQYVEARSLRIHMRSHTGERPYICNICQKGFTQLCNLEKHVRIHTGEKPYLCTTCGKGFTQSGYVAIHMRTHTGEKPYICTTCGKGFAGSNTLAIHLRTHTGERPYSCNTCGKSFSRHESLVIHTRSHTGHKPHVCSVCSRGFTSSGHLAGHMRSHTGEKPHGCEVCGKRFSGSSSLKVHMRGHSGEKPYVCRYCGKAFAQSSALTTHLSTHTGEKNKRSDTVSIGHMTLTHALDNPHVHIDVRHLPLSQAFHLLFVCECLLFLIFKSLLPSENGAISYFEFTVFRYTDASTDLKAVLAAKIPQEVERVKNFRKEYGSVKVGEVSVDMMYGGMRGIKGLVCETSVLDPDEGIRFRGLSIPECQKVLPKAPGGNEPLPEGLFWLLITGEVPTEAQVRAISHEWATRASLPAHVVTMLNNFPQSLHPMSQLSCAVTALNLESKFAKAYSEGASKAKYWEYTYEDSMDLIAKLPVIAATIYCNTYREEGSLKMPAPDPSLDWSANFSRMLKFEDPTFIELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLQKVRKEIGDNVTEDKLKDFVWKTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKLVSNIYKVVPPILTELGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLVWDRALRLPIERPKSLSTDGLIKALKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -