Nign017437.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- ZNF275
- Assembly
- GCA_029203775.1
- Location
- CP092092.1:33754607-33760823[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2e-05 0.00096 20.3 2.9 1 23 10 32 10 32 0.99 2 14 0.00031 0.025 15.8 0.5 2 23 39 61 38 61 0.95 3 14 1.6e-06 0.00013 23.0 2.5 1 23 65 87 65 87 0.97 4 14 1.7e-05 0.0013 19.8 4.8 1 23 93 115 93 115 0.98 5 14 4.2 3.4e+02 2.8 1.3 3 23 124 141 123 141 0.73 6 14 6.5e-06 0.00052 21.1 1.8 1 20 147 166 147 169 0.92 7 14 0.00026 0.021 16.1 4.8 3 23 180 200 178 200 0.97 8 14 8.7e-07 7e-05 23.9 0.1 1 23 207 229 207 229 0.99 9 14 1.4e-06 0.00011 23.2 0.1 1 23 235 257 235 257 0.98 10 14 0.23 19 6.8 4.7 1 11 263 273 263 290 0.83 11 14 4.8e-06 0.00039 21.5 2.1 3 23 301 321 299 321 0.97 12 14 2.6e-06 0.00021 22.4 1.9 2 23 328 349 327 349 0.96 13 14 0.00024 0.019 16.2 0.8 1 23 355 377 355 377 0.97 14 14 5.2e-07 4.2e-05 24.6 0.1 1 23 383 405 383 405 0.99
Sequence Information
- Coding Sequence
- ATGAGTCGGCATAATGGAGAAAAACCTTTCAAATGTACTGAGTGCCCAAAAACATGTTATGAACGCAGTGATCTTGCTCGTCATTTAAAAAGTCATTGGTATATTGAACCAATGAAATGTAAagagtgtgatagaacttttatGTTGAAAGAGCAATTAGAATTACATGTAAGTAGAGTACATATTTCTGGATATTCTTGTGAACACTGTGGAAAAACTTTCAAAAAGCAATCAGTTTTGAAGAAACATGAAATTGTCCACAGTAATAATCGACCTTTTCAATGCACtatttgtgaaaaatgttttaaaaataaaactgcacGAAGAATACATATGAGACAACATTTAGATGCGGACagaaaaattttatgtaatatttgtgGAGGTTCATTTGTTGATATTCGAATGCATATGATGAAACATACTAATGAAAGACCTCATAAATGCTCAGAATGTGGAAAaggtttTCGTACAAATTTTGATCTTCAAGAACATATGCCAAAACATACTGGTCAGCAACGGCCAATGCCATGTCTTTGTACAGGATGTGGTAAAAGATTTCCATACGCATCGCGTCTTCGTTACCACATGTGTAAACATCCAACTGGAGATAAACCATATACGTGTAGTGTATGTGGCCGTGCATTTGCTCTAGCAACTCAATTGAATGCTCATATGCGTTATCACACCGGACATATGCCATATCCTTGTAATATTTGTGAACGTGCATTTCCAACTGCAAGCCGACTTAATTATCATATGCGTGTACATACAGGTGAAAAACCATTTAGATGTTCAACTTGTGGAAAATCATTTAGATTAAATGgaTTCCGTACAAATTTTGATTTACAAGAACACATGCCTAAACATACTGGAAAACCTCGACCAATGCCATGTTTGTGTACTGTATGTGGAAAACGTTTTCCTTATGCTTCTCGTTTACGAGTGCATATGCGAAAACATACAGGTGATCTACcatgtgtatgtaaaatatgtgGTCGTGCATTTGCACAAACATCTCAATTAAATCTACACACTCGAAAACATACAGGTCAATTACCATTTTGTTGTGGTGTTTGTACACGTTCTTTTGCAGCTTCAAATCAACTGGATGAACATATGCGTGTACATACAGGTGAAAAACCATTTCGATGTCCAACTTGTGGAAAGGCTTTTCGTGTCAATGGTACTCTTGTTGTTCATTTAAGAGTTCATACAGAATAG
- Protein Sequence
- MSRHNGEKPFKCTECPKTCYERSDLARHLKSHWYIEPMKCKECDRTFMLKEQLELHVSRVHISGYSCEHCGKTFKKQSVLKKHEIVHSNNRPFQCTICEKCFKNKTARRIHMRQHLDADRKILCNICGGSFVDIRMHMMKHTNERPHKCSECGKGFRTNFDLQEHMPKHTGQQRPMPCLCTGCGKRFPYASRLRYHMCKHPTGDKPYTCSVCGRAFALATQLNAHMRYHTGHMPYPCNICERAFPTASRLNYHMRVHTGEKPFRCSTCGKSFRLNGFRTNFDLQEHMPKHTGKPRPMPCLCTVCGKRFPYASRLRVHMRKHTGDLPCVCKICGRAFAQTSQLNLHTRKHTGQLPFCCGVCTRSFAASNQLDEHMRVHTGEKPFRCPTCGKAFRVNGTLVVHLRVHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -