Nign026032.2
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092096.1:5917260-5919655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.1e-06 0.00025 22.1 0.2 1 23 167 189 167 189 0.96 2 17 1.5e-07 1.2e-05 26.3 1.9 1 23 229 251 229 251 0.98 3 17 0.0077 0.63 11.4 3.2 1 23 295 317 295 317 0.98 4 17 0.00027 0.022 16.0 0.6 2 23 350 371 349 371 0.96 5 17 2.9e-06 0.00023 22.2 3.6 1 23 377 399 377 399 0.96 6 17 0.00016 0.013 16.7 1.5 2 23 425 446 424 446 0.96 7 17 0.043 3.4 9.1 0.6 2 23 469 490 468 490 0.94 8 17 0.0009 0.073 14.4 0.5 1 23 496 518 496 518 0.97 9 17 4.2 3.4e+02 2.8 2.3 2 23 524 545 523 545 0.95 10 17 0.00039 0.031 15.5 0.1 1 23 554 576 554 576 0.97 11 17 0.00026 0.021 16.1 3.3 1 23 581 603 581 603 0.99 12 17 0.0013 0.11 13.8 1.5 1 23 608 630 608 630 0.95 13 17 8.7e-05 0.007 17.6 0.2 1 23 636 658 636 658 0.98 14 17 1.2e-05 0.00097 20.3 3.7 1 23 664 686 664 686 0.99 15 17 2.7e-05 0.0022 19.1 3.3 1 23 692 716 692 716 0.98 16 17 1.3e-05 0.0011 20.1 3.4 1 23 722 744 722 744 0.98 17 17 2e-05 0.0016 19.6 5.9 1 23 750 772 750 772 0.98
Sequence Information
- Coding Sequence
- atggaaATTGAAATGTCTTTTCCAAACGATGTAGATAAGATTTGTCGTTGTTGTATGTctgtttcaaataatatgtattCGCTTTTTTCAAAAGTCGATGCTTTGGGACATAATGAGTACATTTCTGATATGCTAATGGCTTGTGCAACCGttcaaattaatataaatgatggATTACCAGGACTAATATGTACTCACTGCATTCAACAACTAAGTATTGCATATACTTTCAAACAGCAATGTGAAAAGACTGAGTCGAATTTAcgtgaaattttaaaagtatcatctgaaataaatatttcaaattcagcCAATGAGCCACAGTGCATTttacagttaattttaaaatcaaatgatgAAGTTCAATTAAATGATAGTATTTCAAATTTAGTATGTGAAATTAAAGATGAAAACAAAGAAACTTTAATTCTTCTTCATAACTTTAAAGATCCTTCTAATGATTTTGAATTACAATCGAATATAAAGAATGAGTTAATACACATTTGTGGACTTTGTGATGAATCTTTTAAAACACCtgatgatttaaaaattcatattgaaaCACATGTTTGTGAAGTAAATTTTAATgcaaacaaatttaaaacatcatCTAATAACAAATATGCCGATAGCAGAGAAAATTGCTTATTATCAACtaagtttaacaaaaaaaataagcgTATGTTTCAATGTAAAATTTGTGATAAGTCGTTTACTCGAGCTTtcgcattaaaaaaacatttgaaatTACATGAAATAAGTAATGGAGACATTAATGAAAGTCATGAATCCAATCATAAACTAAAAAAGGATAATAGTGTATTtgaagaaaaagttaaaaaagaaactgaTAATTTGTCAGAAATATGTGGagagaaaatgtttaattgtacatattgtaattatttttgtattgaaaaagtTGAATTTAATGATCATATGAAAATTCACGAAAGTGCTGAGATCTATATGAAACAAGAAAGTAATATTGAAAGTATACATGTTCTAGATGCGAATTctgaacaagaaataaaaaagcaaaatttAATATGTGAATTATGTGATAAAATTTTTCCCAATGCACAAAACGTATGTTTACatttaagaaaacataaaagaatattaacatTTAGTTGCTCGTTGTgtgataaaagttttaaaaattcccataatttaaataaacatactttAGCACATTCTAATAACAGCATGAAAGCACATAACTCCGTAAAAACAAATGAAGCTAAAGCACAgatgaaagaaaatttaatcagTTGTGATATTTgtgatcaaaattttaatactcaacatcaattaataatacattttcaaaaacatatatcaGCTTCAGTAATGCTTTTAAatcatgaattaaaaattagtccCACTGAAAATAGTAGTGTTCCATGTTATATCTGCACCCAAATTTTTTCTACAGTAGcagaatttaataatcataagcATGAACATAATGTCGATATTAATTATATctgtaaattttgtaataaattatttgaaaatgaagtcAGTCTAACAGAACATTTAGAAAGTCATACTGATCAATTAATTACTTGCAATATATGTTTATCAGAGTTTAATTGCTGTGCTGATCTCAATACTCATTTAAACGTACATGCTAATTCTTCAGATAAAGTTTCCTATAGATGTATAATTTGTGACGAAATTTTTAAAAGCAGATCTCTTTTATTATCACATATTATAATCCATTTCAGCGAATCATATAAATGTTCTCGATGTCATTTGACTTTTAAAGATTTAGAATCCTTAAACATACATGAAAAACGTCATTCGGATCCAAAATTTTTATGCTCGTCATGCGGTTATCAATTTCAAACAAAGTCTAGATTGATGAATCACATATTACGGCATAATAACGAAAAGCCTTACATCTGTTCGATATGTAATAAAGGCTATAGTTCAAAAGCAGTACTTAAAATTCACGAAAGAATCCATACAAACTATAAACCGTACGTTTGTTCTTATTGCGGATACAGTTGTTGCCAGTCTGGGGATTTACAAATGCACGTTCGTACTCATACGGGTGAAAAACCTTACACGTGCCCGTATCCTAACTGTGATAGGCGGTTCACTACGTCTAGTCATCGTAAAGAGCATATACGAAGACACACCGGCGAAAGAAATCATAAATGTACCGTATGTTCGAAAGCATTCAGTGAATCGAAAACTTTAAAAACCCACATGTTGACGCATTCGGGTCTAAGGCCTTTCACTTGTGAAATCTGTGGGAAAACATTCAGACGCAAACATCATAGAGTGATCCATATGAAACAACATGCTTGA
- Protein Sequence
- MEIEMSFPNDVDKICRCCMSVSNNMYSLFSKVDALGHNEYISDMLMACATVQININDGLPGLICTHCIQQLSIAYTFKQQCEKTESNLREILKVSSEINISNSANEPQCILQLILKSNDEVQLNDSISNLVCEIKDENKETLILLHNFKDPSNDFELQSNIKNELIHICGLCDESFKTPDDLKIHIETHVCEVNFNANKFKTSSNNKYADSRENCLLSTKFNKKNKRMFQCKICDKSFTRAFALKKHLKLHEISNGDINESHESNHKLKKDNSVFEEKVKKETDNLSEICGEKMFNCTYCNYFCIEKVEFNDHMKIHESAEIYMKQESNIESIHVLDANSEQEIKKQNLICELCDKIFPNAQNVCLHLRKHKRILTFSCSLCDKSFKNSHNLNKHTLAHSNNSMKAHNSVKTNEAKAQMKENLISCDICDQNFNTQHQLIIHFQKHISASVMLLNHELKISPTENSSVPCYICTQIFSTVAEFNNHKHEHNVDINYICKFCNKLFENEVSLTEHLESHTDQLITCNICLSEFNCCADLNTHLNVHANSSDKVSYRCIICDEIFKSRSLLLSHIIIHFSESYKCSRCHLTFKDLESLNIHEKRHSDPKFLCSSCGYQFQTKSRLMNHILRHNNEKPYICSICNKGYSSKAVLKIHERIHTNYKPYVCSYCGYSCCQSGDLQMHVRTHTGEKPYTCPYPNCDRRFTTSSHRKEHIRRHTGERNHKCTVCSKAFSESKTLKTHMLTHSGLRPFTCEICGKTFRRKHHRVIHMKQHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -