Nign029720.2
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092098.1:5534439-5538422[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0038 0.3 12.4 0.8 1 23 210 232 210 232 0.98 2 22 9.4e-05 0.0076 17.5 4.7 1 23 259 281 259 281 0.96 3 22 9.2e-06 0.00075 20.6 1.7 1 23 287 309 287 309 0.95 4 22 0.00034 0.027 15.7 0.2 1 23 316 338 316 338 0.97 5 22 0.013 1 10.7 2.5 1 23 344 366 344 366 0.97 6 22 1.9e-06 0.00015 22.8 1.5 1 23 372 394 372 394 0.98 7 22 7.4e-05 0.006 17.8 0.7 2 23 401 422 400 422 0.93 8 22 0.0035 0.28 12.5 0.5 1 23 429 451 429 451 0.97 9 22 0.0016 0.13 13.6 2.8 1 23 457 479 457 479 0.98 10 22 6.9e-05 0.0056 17.9 0.9 1 23 485 507 485 507 0.95 11 22 0.00011 0.0092 17.2 0.4 1 23 514 536 514 536 0.97 12 22 9.8e-07 8e-05 23.7 0.5 1 23 542 564 542 564 0.98 13 22 0.022 1.8 10.0 0.7 5 23 574 592 573 592 0.92 14 22 0.00027 0.022 16.0 0.2 1 23 599 621 599 621 0.97 15 22 9.8e-07 8e-05 23.7 0.5 1 23 627 649 627 649 0.98 16 22 0.022 1.8 10.0 0.7 5 23 659 677 658 677 0.92 17 22 0.0019 0.15 13.4 0.3 1 23 684 706 684 706 0.97 18 22 0.32 26 6.3 2.3 1 23 712 734 712 734 0.96 19 22 3.7e-05 0.003 18.7 0.8 1 23 740 762 740 762 0.95 20 22 0.0036 0.29 12.5 0.4 1 23 769 791 769 791 0.97 21 22 0.00014 0.012 16.9 2.8 1 23 807 829 807 829 0.95 22 22 0.0037 0.3 12.4 0.4 1 23 836 858 836 858 0.97
Sequence Information
- Coding Sequence
- ATGATGAACTACAATCTGGACGTTCATCGATATCGACTGACGATGAACACGCAGCTTTGGGATGTCgtttGTAAGAATGAAAGATTATCGTCGTTTGTCTGCCATTCATGTGCCGAGTATTTGAAGACGTTCGCTGTTTTCCACAATAAATGTATCGAAACAGAGTCTGCATTATGTGATTTCCTTCGAGATTCGCACTTCGGCATAGAAGTAAAAAAGGAACCGGAAAATAATGTAACAGACATCGATAAAGATTGTAGTTTTTCCATGcaggaaaaaatatcttttcgacAATGTTTACGAACCGATATCGATTCGTGCACAAAAAACGTCGATGAACCGAATATCGTAAAAGTTAAAATCGAAGTAGACGATGAAGAAACTAACGACAAGAGAACGCAGTCATGTTTTTCTACATCGTACGAGAGAGGATCGGATGAAAATCTCAGAACGTATTTTTCTTTACAAGAATCGATCGGTATAAAAGAGGACAACGAGGATTTTGTCGACGATGAGAACACGACGTCGGAAGTACCGATCGACGCAAGAGAGACACGCGCGACGGATTCGGACAACCGGGAAGAGCAGTCGTTAGAAAGTAGAAGAATTCTTTTAGGTCACGATTCGTTCACTTGCGACTCGTGCAACGGGTCGTTTGCGACGAAGACACGTCTCGACGTACATTTAAAAACACACTGTGAAGGAAAAGATCTCGGCGCGACAAAGTCGTACCATCAACGTGCGACTAAGAACGTCGACGTCTCCGATAGACCGTTTCCATGCGATCGATGCAAAAAGTCGTTCTCGATGAGACATCAGTTACGCAAACATATGTACCTCCATACCGGCGAGGAGCCGTTCAAGTGCGACACGTGCGGTAAGTCGTTTGCTCGGAAATATACATTAAACCTACACTCCTacgtgcattccaaaaaaaagagaCCGTTCGCATGCGATCTGTGCTCGAAATCGTTCTTCACCACCGGGCGTCTGGCCGCGCACATGAACGTGCACCTTGACAAACAGCCGTTCAAGTGCGACAtatgcgaaaagtcgttttcgtgCAACTCGATTCTGGTTCAGCATAAGAGAGTTCACACGGGTGAAAAACCTTTCAAGTGCgacgaatgcgaaaagtcgttttcgtCCAAACCGAATCTGAGTCAGCATAAGAAAGTTCACACGGGTGAAAAACCGATCAAGTGCGACACTTGCGGCATGTCGTTCAGTAACAATAGTAGTTTATACAATCACTCCTTcgtgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGTACGAAATCGTTCTTCACCACCGAGCGTCTAGCCGCGCACAAGAACGTGCACCTCGGCAAACGACCGTTCGAGTGCgacgaatgcgaaaagtcgttttcgtgCAACTCTTTTCTGGTCCAGCATAAGAGAGTTCACACGGGTGAAAAACCGTTCGAGTGCGACACGTGCGGTATGTCGTTTGCTCGGAAATATACATTAAACCTACACTCCTACatgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCACGAAATCGTTCTTCACCAACGAGAGTCTGGCCGCGCACAAGAACGTGCACCTCGGCAAAAAACCTTTCGAGTGCgacgaatgcgaaaagtcgttttcgtCCAAACCAAATCTGGTCCAGCATAAGAGAGTTCACACGGGTGAAAAACCGTCAAAATTCGACACGTGCGGCATGTCGTTCAATAATAAAAGTAGTTTAGACCATCACTCCTacgtgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCACGAAATCGTTCTTCACCAACGAGGGTCTGGCCGCGCACAAGAACGTGCACCTCGGCAAAAAACCTTTCGAGTGCgacgaatgcgaaaagtcgttttcgtCCAAACCAAATCTGGTCCAGCATAAGAGAGTTCACACGGGTGAAAAACCGTCAAAATTCGACACGTGCGGCATGTCGTTCAATAATAAAAGTAGTTTAGACCATCACTCCTacgtgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCTCGAAATCGTTCTTCACCGCCGAGCGTCTGGCCGTGCACAAGAACGTGCACCTCGGCAAAAAATCGTTTAAGTGCGACGAATGCGAAAAGTTGTTTTCGTGCAACTCGATTCTGGTCCAGCATAAGAGAGTTCACACGGGTGAAAAACCTTTCGAGTGCGACACGTGCGGCATGTCGTTCAATCAAAAAAGTAGTTTAGACCGACACTCCTACGTGCATTCCGAAAAAAAGAGACCGTTCGCGTGCGATCTGTGCACGAAATCGTTCTTCACCACCGGGCGTCTGGCCGCGCACAAGAACGTGCACCTCGACAAAAAACCTTTCAAAAAGTTCACACGGGTAAAAAAACCGTTTAAGTGCGACACGTGCGGCATGTCGTTCAATAATAAAAGTAGTTTAGACCATCACTCCTacgtgcattccaaaaaaaagagaCCGTTCGCGTGCGATCTGTGCTCGAAATCGTTCTTCACCACCGGGCGTCTGGCCGCGCACAAGAACGTGCACCTCGACAAACAACCGTTCGAGTGCGACATATCACAGCAtccgaaagggcattaa
- Protein Sequence
- MMNYNLDVHRYRLTMNTQLWDVVCKNERLSSFVCHSCAEYLKTFAVFHNKCIETESALCDFLRDSHFGIEVKKEPENNVTDIDKDCSFSMQEKISFRQCLRTDIDSCTKNVDEPNIVKVKIEVDDEETNDKRTQSCFSTSYERGSDENLRTYFSLQESIGIKEDNEDFVDDENTTSEVPIDARETRATDSDNREEQSLESRRILLGHDSFTCDSCNGSFATKTRLDVHLKTHCEGKDLGATKSYHQRATKNVDVSDRPFPCDRCKKSFSMRHQLRKHMYLHTGEEPFKCDTCGKSFARKYTLNLHSYVHSKKKRPFACDLCSKSFFTTGRLAAHMNVHLDKQPFKCDICEKSFSCNSILVQHKRVHTGEKPFKCDECEKSFSSKPNLSQHKKVHTGEKPIKCDTCGMSFSNNSSLYNHSFVHSKKKRPFACDLCTKSFFTTERLAAHKNVHLGKRPFECDECEKSFSCNSFLVQHKRVHTGEKPFECDTCGMSFARKYTLNLHSYMHSKKKRPFACDLCTKSFFTNESLAAHKNVHLGKKPFECDECEKSFSSKPNLVQHKRVHTGEKPSKFDTCGMSFNNKSSLDHHSYVHSKKKRPFACDLCTKSFFTNEGLAAHKNVHLGKKPFECDECEKSFSSKPNLVQHKRVHTGEKPSKFDTCGMSFNNKSSLDHHSYVHSKKKRPFACDLCSKSFFTAERLAVHKNVHLGKKSFKCDECEKLFSCNSILVQHKRVHTGEKPFECDTCGMSFNQKSSLDRHSYVHSEKKRPFACDLCTKSFFTTGRLAAHKNVHLDKKPFKKFTRVKKPFKCDTCGMSFNNKSSLDHHSYVHSKKKRPFACDLCSKSFFTTGRLAAHKNVHLDKQPFECDISQHPKGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01050539;
- 90% Identity
- -
- 80% Identity
- -