Basic Information

Insect: Neoneuromus ignobilis
Gene Symbol: -
Assembly: GCA_029203775.1
Location: CP092089.1:13735528-13752325[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.4e-05 0.0052 18.0 2.9 1 23 128 150 128 150 0.97

2 18 2.8e-07 2.3e-05 25.4 1.1 1 23 156 178 156 178 0.99

3 18 1.9e-05 0.0015 19.7 1.4 1 23 184 206 184 206 0.97

4 18 8.8e-05 0.0071 17.6 1.5 1 23 218 240 218 240 0.92

5 18 3.1e-05 0.0025 19.0 1.6 1 23 246 268 246 268 0.96

6 18 0.00041 0.033 15.5 3.0 1 23 274 296 274 296 0.97

7 18 3.8e-06 0.00031 21.8 3.5 1 23 302 324 302 324 0.98

8 18 0.00053 0.043 15.1 0.5 1 23 330 353 330 353 0.92

9 18 2.9e-07 2.4e-05 25.4 2.8 1 23 362 384 362 384 0.99

10 18 2.4e-06 0.0002 22.5 0.3 1 23 390 412 390 412 0.98

11 18 1.9e-05 0.0015 19.7 1.3 1 23 418 440 418 440 0.97

12 18 0.00028 0.023 16.0 3.4 1 23 446 468 446 468 0.98

13 18 1.6e-05 0.0013 19.9 0.5 1 23 474 497 474 497 0.96

14 18 0.00012 0.01 17.1 0.5 1 23 512 534 512 534 0.98

15 18 0.00039 0.031 15.5 1.5 1 23 540 562 540 562 0.96

16 18 0.00083 0.067 14.5 3.6 1 23 568 590 568 590 0.97

17 18 4.1e-05 0.0033 18.6 1.6 1 23 596 618 596 618 0.99

18 18 1.7e-05 0.0014 19.8 0.5 5 23 628 647 626 647 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.4e-05	0.0052	18.0	2.9	1	23	128	150	128	150	0.97
2	18	2.8e-07	2.3e-05	25.4	1.1	1	23	156	178	156	178	0.99
3	18	1.9e-05	0.0015	19.7	1.4	1	23	184	206	184	206	0.97
4	18	8.8e-05	0.0071	17.6	1.5	1	23	218	240	218	240	0.92
5	18	3.1e-05	0.0025	19.0	1.6	1	23	246	268	246	268	0.96
6	18	0.00041	0.033	15.5	3.0	1	23	274	296	274	296	0.97
7	18	3.8e-06	0.00031	21.8	3.5	1	23	302	324	302	324	0.98
8	18	0.00053	0.043	15.1	0.5	1	23	330	353	330	353	0.92
9	18	2.9e-07	2.4e-05	25.4	2.8	1	23	362	384	362	384	0.99
10	18	2.4e-06	0.0002	22.5	0.3	1	23	390	412	390	412	0.98
11	18	1.9e-05	0.0015	19.7	1.3	1	23	418	440	418	440	0.97
12	18	0.00028	0.023	16.0	3.4	1	23	446	468	446	468	0.98
13	18	1.6e-05	0.0013	19.9	0.5	1	23	474	497	474	497	0.96
14	18	0.00012	0.01	17.1	0.5	1	23	512	534	512	534	0.98
15	18	0.00039	0.031	15.5	1.5	1	23	540	562	540	562	0.96
16	18	0.00083	0.067	14.5	3.6	1	23	568	590	568	590	0.97
17	18	4.1e-05	0.0033	18.6	1.6	1	23	596	618	596	618	0.99
18	18	1.7e-05	0.0014	19.8	0.5	5	23	628	647	626	647	0.93

Sequence Information

Coding Sequence: ATGGAATGTGCTTCGATATCTatatcaGTTGATGATGGCCTTCCATCCAAAATTTGTGAGAAATGTGTGGAAAAATTACAGATTGCTAAAGATTTTCGTGAATTGTGTATTAAATCCGACAAAACACTTCGTGAAAGTAATAACTTAACTAAATTAAACCAACCTGATACTACTGAAGAAAAACCGCCGGAAATTCCTGTAAAACCTGAAATTCCTGTAAAATCTGAAATTGATCTTTCAAATTTTGGTGATGAAGAACTTTTAAGTAATGAAAATTCTCTTTCGAGTCCGAAAACCAATGCTTCAAATGAAGAACCATCCAATGATGCACAAGAAAAATTCACTAGTCCTTGTTCAGACACTGAACTTAATTTAAGACGGCACGTTTGTGAACAATGTGGTAAACGTTTTTTTCGCACCcaagaattaaaaattcataaaagggTTCATACTGGTGAGAAACCGTTCCgttgtaatatttgtaaaaaacgtTTTACAGTGAAAGCAAATTTAATACAACATTTAAGAGTTCATACAGGAGAAAGGCCATATTCTTGCGAATTATGTAGTAAATCATTTAATACGAGTACAAGCTTGATAAGACATAAGTTACTACATGAGAATAGAAATGGTCCACGGATTGATTTTCCTCATGTTTGCATTGTATGTGGGAAGAAATTTCGTTTAAAAGCAAATCTGAATACACATATTAGACAACATACAGGTGAAAGAGTGCACGCATGTGATGTTTGTGGGAAAAGCTATAAATACAGTAATCAATTGGTAATACACAAGAAAACACATTCAGGAGATCGTCCACATGTGTGTGAAACATGCGCCAAACGTTTTTATCGAAACACCGAGTTAAAATTGCATAAACGAATCCATACAGGTGAACGACCATACGAGTGTGAACATTGCTCTAAACGATTTTCAATGAAATCGAATTTAGTTCAACACAAGCGTATTCATACCGGCGAAAGACCATATGCGTGTGACGCGTgtgaaaaaacatttaacacAAGTACGAGCCTTGTAAGACATAAATCTTTATTACATCGAAGTGTTAATTCTGGACCTGCTTATActtgtaatatttgtaaaaagacTTTCACGCAAAAACAATCTCTCACATCGCATGTTCGTATGCACACTGGAGAAACTCCTTATGAATGTGATCAGTGTGATAGAAAATTCAGAGATGCAGGTTTACTTGCAAAACACAAGCGTGTACATGCTGATGATCGACGTCATATGTGCGAAGTATGTAGTAAAAGGTTTTATGAACGTGCTGAACTCAAGATACATATGCGCGTGCATACTGGTGAACGACCGTTTCCATGCGAGTATTGCTGCAAAAGATTCACAATTAgGTCAAATCTGGTTCAACACCTCCGAACTCATACAGGAGAAAGACCGTACAGGTGCAACATCTGCGCAAAGGCGTTCAACACAAGCACGAGTCTTGTCCGTCACCGTATGTTGTTACACAGTGCCGAAAAATCAAACACGGCAGATTCTGAACGATATCCGTTTTCATGCAAGACGTGCAACAAGGGATTCTTTCAGGCGGACGTCCTCGAGACCCACGTTCGCGTCCATACCGGCGAACGACCGCACGCGTGCGATCTGTGCAACAAGATGTTCCGTGAGCCTCGACTCCTCGACAAGCACAGAAAGATTCACACAGGCGACAAACGACACATGTGCGATGTGTGTAGCAAACGGTTCCACGAATTCGGAGATCTCAGGATACACATGCGCTCGCACACGGGCGAGCGACCTTTTGAGTGCAATATGTGCTTGAAACGGTTCACGATCAAATCGAACATGGTGCAACATCTACGAACGCATACGGGCGAGAGACCGTTCGGATGTATAGTATGTGACAAACGATTTAACACCCCAAGCAGTTTAACTAGACACATTCGATTATTGCACGCGGGCGTCATTAACAGCaataaaagtgaataa
Protein Sequence: MECASISISVDDGLPSKICEKCVEKLQIAKDFRELCIKSDKTLRESNNLTKLNQPDTTEEKPPEIPVKPEIPVKSEIDLSNFGDEELLSNENSLSSPKTNASNEEPSNDAQEKFTSPCSDTELNLRRHVCEQCGKRFFRTQELKIHKRVHTGEKPFRCNICKKRFTVKANLIQHLRVHTGERPYSCELCSKSFNTSTSLIRHKLLHENRNGPRIDFPHVCIVCGKKFRLKANLNTHIRQHTGERVHACDVCGKSYKYSNQLVIHKKTHSGDRPHVCETCAKRFYRNTELKLHKRIHTGERPYECEHCSKRFSMKSNLVQHKRIHTGERPYACDACEKTFNTSTSLVRHKSLLHRSVNSGPAYTCNICKKTFTQKQSLTSHVRMHTGETPYECDQCDRKFRDAGLLAKHKRVHADDRRHMCEVCSKRFYERAELKIHMRVHTGERPFPCEYCCKRFTIRSNLVQHLRTHTGERPYRCNICAKAFNTSTSLVRHRMLLHSAEKSNTADSERYPFSCKTCNKGFFQADVLETHVRVHTGERPHACDLCNKMFREPRLLDKHRKIHTGDKRHMCDVCSKRFHEFGDLRIHMRSHTGERPFECNMCLKRFTIKSNMVQHLRTHTGERPFGCIVCDKRFNTPSSLTRHIRLLHAGVINSNKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -