Nign000810.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092087.1:19328108-19332177[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.3e-05 0.0051 18.0 5.5 2 23 189 210 188 210 0.97 2 19 0.02 1.6 10.1 0.4 1 23 244 266 244 266 0.96 3 19 0.00035 0.029 15.7 0.4 1 23 271 293 271 293 0.95 4 19 0.00022 0.018 16.3 3.1 1 23 299 321 299 321 0.97 5 19 5.5e-06 0.00044 21.3 4.3 1 23 327 349 327 349 0.96 6 19 4.3e-06 0.00035 21.7 4.7 1 23 355 377 355 377 0.98 7 19 7.8e-06 0.00063 20.9 5.6 1 23 383 405 383 405 0.98 8 19 0.15 12 7.4 0.6 1 13 411 423 411 425 0.85 9 19 0.14 11 7.5 0.7 2 23 430 452 429 452 0.96 10 19 1.2e-06 0.0001 23.4 1.1 1 23 457 479 457 479 0.98 11 19 1.9e-06 0.00016 22.8 2.3 3 23 487 507 485 507 0.98 12 19 4.2e-06 0.00034 21.7 0.6 1 23 513 535 513 535 0.98 13 19 3.2e-07 2.6e-05 25.2 1.7 1 23 541 563 541 563 0.99 14 19 0.00053 0.043 15.1 0.5 1 23 588 610 588 610 0.95 15 19 2.2e-05 0.0018 19.5 2.3 1 23 616 638 616 638 0.97 16 19 3e-05 0.0025 19.0 2.8 1 23 644 666 644 666 0.96 17 19 1.8e-05 0.0014 19.7 3.3 1 23 672 694 672 694 0.98 18 19 5.9e-08 4.8e-06 27.5 0.3 1 23 700 722 700 722 0.99 19 19 4.4e-06 0.00036 21.6 1.9 1 23 728 750 728 750 0.98
Sequence Information
- Coding Sequence
- ATGGAAaatttttgtagtaaaataaataaattaaactttaatcaGATATGTCGGTCTTGTTTGAGTGAaggtaattttatatcaatatattcaaCTGTGAATGTTCTTAATAGAGATTTTTCGTTACTTATGATTCTGATGGAATGTACTTCTGTTAAgATTGTTGAAGGCGATAAACTTCCAACTCAGATGTGTTCAAAATGTGTTGAGCAAATTATATCAGCATATATCTTTAAACGACAATGTGAACAAGCTGATAAAGTGCTGCATATGCaacttaaacaattaaaagaaaCTCATTATTCAAATGAAGTATTTAGAGCAAATATAGATATGACAACAACAGatgatgatttaaaaaaaatatgtttatctactgacagaaaatgtaataataaatgtacagaTCAAAATTCTAAACAGActgaagaagaaaaaaatacaaaaagtgaATTAACTGAATTATCACTCAATTCCAAAATAGTCAATGTAGatgaaaaaatttcattaaattttcataacaatataagtgaaaaaaaaaaatctgattcaaatatttcattaaaatgtaatttatgtgAAAAGTATTTCATACAGTCATCACATTTACGACATCACTTAAggaatcataaaaaaaaaacaaataaaaatacagaaaatcaaaaattaagaaCGTCAGATATAACTAGGCGCTTtcgaaaaaaacattcaatgatAAAAGAAAAACCATATAGAtgcaatatttgttataaaggTTATTTATCAAAAGGTGCATTGAAAACACATTCTATAATACATGGTGATAAAGGCTTTTTATGTACAGAATGTGGAAAGACATttgttaaaatgataatattacaaaatcatATGAGAATTCATACAGGTGAACGTCCTTTTCATTGCACTATATGTGATAAAGATTTTACTGGGAAAAGCTCATTTAATAGCCACAAATTAATTCATACAGATGAACGTCCTCACTGCTGTGATATATGTGGTAAATCTTTTAAGCAAAGTGGaacattaaaaacacatttattgtcTCATACAGGTGAAAAACCTTTCTCTTGTTCTCTTTGCAATAAATCATTTACTCAAcgtaatcatttaaaatatcatatggcAACACATAGTGGTGTTAAGCCGCATGTTTGTTCTGTATGTGGCCATGGCTTTACCCAAAAATGTAACTTAACGGCACATATGCGAAGACACACAGGAGAAATGCCATTTTTATGTCCAGAATGTGGAAAAGGCTTTTATGATTCAACAAaaagccaaatattaaaatgtaaagtaTGCGatgatgaatttttaaataaaacagatttagCAACACATAAACGAATTAAACATTGTAACTTAAAATATGCCTGTACTATGTGTTCCAAACGATTTGTTACGTCATCTAAACTTCAAATACATATTCGATCTCATACAAGAGAAAAACCATTTGGTTGCCACATATGTGATATGAAATTTACAAGCAGGGGAAACTTACAAAGACATCTTATGACACACACGGGAGAAAGACCTCATCGTTGTCATATTTGTGGCAAAGGGTTTATACAGGCTCCAACATTAGCAGATCATTTAAGAGTTCACACTGGTGAAATGCCTTATGTATGTAGCTCTTGTGGTAAAACCTTTAAACAACTTGGACAATTGCGACAACATCAAAAAACGCATGATCCAAAAAGTAAAGAAGATATAGAAAAAGAAACTTTACAAAAACGTGAGCAAGCTAAAgctcaaaaaacttttttatgcaGTTTATGTGGAAAAGCATTTGCAACAAAATTTTTTCTTGTTCTTCATAATCGTATACACACTGGTGAGAGACCATATGAGTGTAATATATGCcataaatcatttaaacaaaAAGGTGTTCTTAAAACTCATAGTTTAATACATACAGATGAAAAAACACATAATTGTACAGTATGTGGTAAAAATTTCAAACGTAAAGCTGGATTAAAAACTCATAATTTAACTCATACAGGAGATAAACCTTTTTCATgttcattttgtgaaaaaacaTTTAGTCAGGGTGGTCATCTTAAATATCATATGAGAATACATAGTGGTGAAAAACCTTACACTTGCAGTATTTGTGGGAAAAATTTTGCACTTAATGGTAATTTGACAGTACATATGAGAACTCATACAGGAGAAACTCCTTATATTTGCCCTGTATGTGGAAAAGGTTTTTATGATTCCAGTAGTATGAAAAAACATCATAAAAATCATATAGACAATCGATGA
- Protein Sequence
- MENFCSKINKLNFNQICRSCLSEGNFISIYSTVNVLNRDFSLLMILMECTSVKIVEGDKLPTQMCSKCVEQIISAYIFKRQCEQADKVLHMQLKQLKETHYSNEVFRANIDMTTTDDDLKKICLSTDRKCNNKCTDQNSKQTEEEKNTKSELTELSLNSKIVNVDEKISLNFHNNISEKKKSDSNISLKCNLCEKYFIQSSHLRHHLRNHKKKTNKNTENQKLRTSDITRRFRKKHSMIKEKPYRCNICYKGYLSKGALKTHSIIHGDKGFLCTECGKTFVKMIILQNHMRIHTGERPFHCTICDKDFTGKSSFNSHKLIHTDERPHCCDICGKSFKQSGTLKTHLLSHTGEKPFSCSLCNKSFTQRNHLKYHMATHSGVKPHVCSVCGHGFTQKCNLTAHMRRHTGEMPFLCPECGKGFYDSTKSQILKCKVCDDEFLNKTDLATHKRIKHCNLKYACTMCSKRFVTSSKLQIHIRSHTREKPFGCHICDMKFTSRGNLQRHLMTHTGERPHRCHICGKGFIQAPTLADHLRVHTGEMPYVCSSCGKTFKQLGQLRQHQKTHDPKSKEDIEKETLQKREQAKAQKTFLCSLCGKAFATKFFLVLHNRIHTGERPYECNICHKSFKQKGVLKTHSLIHTDEKTHNCTVCGKNFKRKAGLKTHNLTHTGDKPFSCSFCEKTFSQGGHLKYHMRIHSGEKPYTCSICGKNFALNGNLTVHMRTHTGETPYICPVCGKGFYDSSSMKKHHKNHIDNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -