Nign010563.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neoneuromus ignobilis
Gene Symbol
ZNF236
Assembly
GCA_029203775.1
Location
CP092090.1:4150480-4155610[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.0013 0.11 13.9 4.0 1 23 47 69 47 69 0.95
2 23 0.093 7.5 8.0 0.2 1 23 75 97 75 97 0.97
3 23 7.9e-06 0.00064 20.8 0.2 2 23 103 124 102 124 0.96
4 23 0.00037 0.03 15.6 0.2 2 23 131 152 130 152 0.97
5 23 0.34 28 6.3 4.6 2 23 164 185 163 185 0.95
6 23 1e-06 8.5e-05 23.6 2.0 1 23 213 235 213 235 0.96
7 23 7.3e-05 0.0059 17.8 3.3 1 23 241 263 241 263 0.98
8 23 3.3e-05 0.0027 18.9 1.2 1 23 269 292 269 292 0.97
9 23 0.0004 0.032 15.5 1.9 1 23 301 324 301 324 0.97
10 23 0.00029 0.023 15.9 0.6 2 23 397 418 396 418 0.97
11 23 6.1e-08 4.9e-06 27.5 0.7 1 23 424 446 424 446 0.99
12 23 6.3e-06 0.00051 21.2 1.3 1 23 452 474 452 474 0.98
13 23 0.0041 0.33 12.3 0.9 1 23 481 503 481 503 0.97
14 23 5.9e-05 0.0048 18.1 3.6 1 23 556 578 556 578 0.98
15 23 7.2e-06 0.00058 21.0 1.5 1 23 584 606 584 606 0.99
16 23 4.5e-05 0.0037 18.5 2.5 1 23 612 634 612 634 0.98
17 23 2e-06 0.00016 22.7 0.6 1 23 853 875 853 875 0.98
18 23 1.8e-06 0.00015 22.8 2.6 1 23 881 903 881 903 0.98
19 23 8.9e-06 0.00072 20.7 1.5 1 23 910 932 910 932 0.98
20 23 0.012 0.98 10.8 4.8 1 23 938 960 938 960 0.93
21 23 3.4e-06 0.00028 22.0 1.1 3 23 1145 1165 1144 1165 0.98
22 23 1.7e-06 0.00014 23.0 0.5 1 23 1171 1193 1171 1193 0.98
23 23 9.6e-05 0.0077 17.4 1.2 1 23 1199 1222 1199 1222 0.98

Sequence Information

Coding Sequence
ATGTTCACAGAGAGTATAGATTTAAACAATTGTATTTTGATACAAACAGGTGACATTAATTTAAACGATATACAGTATAAAGTACCGGAAGAAACCGAAGTTATACGTATAATTAGCGATGAttcgaaaaatACGGTGTTCACGTGCCAGTTTTGTAATAAAACGTTCTCGAAAtggattacatttaaaaaacatgaaaccaatcataaaaaagagaaaaagttCAAATGTGATGAATGCTTGGCGtcgtttaatattattacaaatTTAACATTACATAAAgcaatacataataaaaacgaAACGAAATGTCCCGAATGTAACAAAGTCTTTACGAGAGTTGCGAGTTTACGAGCGCATCTCATTTTACATGAAAAAGATGAAAGTATTTCTTGTCCGGAATGCCAAAAACTTTTTGACACGGAActACAACTTGAAAGTCACATGAAATCACatggaaagaaaaaaaatcctactGAGGATAATTTGAGATGTAAATTGTGTAACAGAGATTTTACAAATGCTACAGAACATAAAATACACATGCATAATCATAATAAAatgAAGCACCTTTTGGTCGGTTTGCCACACAAAAATACGAACGGAAAGAACCGAAAAGCAAGAACGAGATACGCACACGCTTGTAATGACTGTCCGAAAACTTTTCAGAAACGTAGTCAACTCGTGAGACATATGAGAGTGCACAATGGTGAAAAACCTTTTCAAtGTCAACTATGTAACCATGCATTCAGTCAAAATAATACCTTGAAAATACACATGTCAAAACATACTGGAATTAAACCATTTAAATGCTCTCTTTGCCCTGGTACATTTAGCCAAAAAGGAAATCTTCGTGTTCACATACACAGAGTGCATTCTATACCCCGTGAAGAAAATGCATTCCATTGTACTGAATGTGCATGCGCTTTTCGTAGATTGAGTGCTTTAAATGCTCATATTAACAGAGTGCATGGTGATACACCTACAAATTTTGATCCATCAAAGGGATACCCTCCTAATATAACTATTTCAAATAGTTCATTTTCGAATGTCGTCCATGAATCAGGATCGAGTGATAAGTCTAGTCAAGATGgttgtaaatatataacattagcAGATACAGACATGGAAGGAATAATGAAAAGATATTACATTAGGCAAAGAAAAATCGAAGGTGTACGATGGCTGCGTTGCACGTattgtataaaagaatttaaaaagcCTTCAGATGTAGTTAGACACATAAGAACGCATACAAGAGAGAAACCGTTTCAGtgTCCTAAATGTGGCCGTGGTTTTGCTGTAAAATCAACTTTAACAACACATATGCGTACTCAcacgaatgaaaaaatatataattgtgctTTATGTGACAAATCTTTTTCATCTTCAAATTCTTTACAAGCACACTTTAGgCGACATACcggtataaaaaaatcatatcgatGTAAATCATGTTCAAACACATATAATACGCCTGAACAACTTAAAATTCATTCAATGATACATGCAAGAgaagaacaaaaaaaagaaaatattgaaccCAATACACTACTACCTCAAATACAACTTAAAGatccaatttttattacaaatagagGAAGCAGACTGTACTGTACAccaacaaaaacaaaatttctCAAGTCATCCAAAGTTTTTCGTGCACACACTTGTCAAACTTGTGGATCAAGTTTTCGTAAATCTGGACAATTGAAGCAACATTTACGAATGCATTCAAACGATAGACCGTATTCTTGCCCAAAATGTGAaagAACGTTTAAATCATCTACTGTTCTAAATACACATATCAAGACTCATGATGCGATCAAACGGTTTCATTGTACTGAGTGTGAAAGTGCTTTTACAACAAAAGGGAGTCTAAGAAGACACATGATAAAGCACAGTTCTCAAAGGCCATACATgcTTCTGAAGAAAGACAAAGATTGCAGCAAGcaaaacataattcaatttaatgattCTCCAAAACATgaacaaattgaattaattaaccAAGAGGATAAATGTCCAAACATAACAGTAACCAAAGAATTATTGACTAGTTTAGATGCCAGTACAAAACACATACAACTTCCAGTATTTCATCAAGAATTTGATCCAAAATTTTATACACAGCAAATCAGTTTAGTATCAAATTCAGTTAATGATAATGTGGATAACTTTGAAATAGTTGATCAGGAcattccaaatatattttattctcataATGCTGTTGATGTACAAAATAATGATTGCATATTCATCAATACTGATGAAGCAACTGAAAACGTATCAAATCTAAATACATTACCCTCCATTTACACTCTCGAAAAAACCGAGAATAATTCTAGAATAGCAAAGAAATCAAATAGAAGACTCCGTATACTCAAACAGAGATCTAAACCGAAAGTAGCAGTGGAAGAAACCATTGATAAAGATCAGAATCATAACGAATctgattcaaaaattaatttaattaaaaatgaatttataaataattcagaaaacaatgaatatttcatcaacacttctaataataataacaataatataaaaaaatacatatgttccACCTGCTTGAAAGGTTTCAGAAAGCCATCTGATTTAGAACGTCATATCAGAACTCATACTGGGGAACGACCATTTAGATGTGAAAAATGTGGAAAAAGTTTTTCTCTGAAATCAACACTTAAAAGTCATACAAAGATACATAgctcagttttaaaaaaatttacatgtcCTCAATGTGACTGTTTGTTTAGTACCAAAGGGAGCCTTAAAGTTCATATTAGAATACATACagGTTCAAAACCTTTTCAGTGCCCTTATTGTCCCATGAGGTTCAGAACATCCGGTCATAGACAAACTCACTGCCAAGTACATTTAAAAGAAGCAGAAAGATCAAATAGTACAagtagtaatattaaaaaaacaaaaaaatccataaaagCAAAAATGGATGATAAGCCAAATTTTGAAACTGATGAAATAGACAATCTAACTTCAGTAGAAAATATTCGGCCAATTCAGCCTGAAGAAAATTCtaatATTTGTTATACTCTCCCAGACAATCAAGCATCAAATGCAATAAATTTAGACATGTTAAGTACATTCCCAGAGACTATTTTAGAGAATATCCAACAGCCGGAACAAGATACATCAATTTTAGAACAATTAGAAAGTGGTGGATTGCTTATCCATGATGTGTTTAATAATACAGATCAATCTTGGTACGATGTTGAAATGTATGAATCTGGTCAGATCATCAATGTCCATTTGGCTTCAAACAGTAAAACTGGTTCTGAAGATATCCCTAATGAACTTGAAGCAGCTATTCCATGTTCAGTCGAATTCATACAAGAATCAAACAATCCAATCCAAATAGAACAAGAGAATAATGATGTCTTAGAATCAAGtcgaaataatcaaaatatttgtagttACTGTAAGAAAACTTTTGAAAAACCGAGTAAATTAGAAAGGCACTTAAGGGTCCATACTGGTGATAGACCATTTATTTGTGCAATCTGTAAGAAAgcatttacacaaatgaattcatTGAATGCTCATATGAGGACACATTCAGGAAACAAGccttataaatgtttatattgtgaTCATAGTACAGCGCAAAAAGGAaacttaaatatacatttaatgaaAATCCATGGAGTGTCTGGAAATCAATTTGGTGTACTGAAAACACCGATCCTAGAAGAAATTGAACAAAAGTTAAATGaacatatacaataa
Protein Sequence
MFTESIDLNNCILIQTGDINLNDIQYKVPEETEVIRIISDDSKNTVFTCQFCNKTFSKWITFKKHETNHKKEKKFKCDECLASFNIITNLTLHKAIHNKNETKCPECNKVFTRVASLRAHLILHEKDESISCPECQKLFDTELQLESHMKSHGKKKNPTEDNLRCKLCNRDFTNATEHKIHMHNHNKMKHLLVGLPHKNTNGKNRKARTRYAHACNDCPKTFQKRSQLVRHMRVHNGEKPFQCQLCNHAFSQNNTLKIHMSKHTGIKPFKCSLCPGTFSQKGNLRVHIHRVHSIPREENAFHCTECACAFRRLSALNAHINRVHGDTPTNFDPSKGYPPNITISNSSFSNVVHESGSSDKSSQDGCKYITLADTDMEGIMKRYYIRQRKIEGVRWLRCTYCIKEFKKPSDVVRHIRTHTREKPFQCPKCGRGFAVKSTLTTHMRTHTNEKIYNCALCDKSFSSSNSLQAHFRRHTGIKKSYRCKSCSNTYNTPEQLKIHSMIHAREEQKKENIEPNTLLPQIQLKDPIFITNRGSRLYCTPTKTKFLKSSKVFRAHTCQTCGSSFRKSGQLKQHLRMHSNDRPYSCPKCERTFKSSTVLNTHIKTHDAIKRFHCTECESAFTTKGSLRRHMIKHSSQRPYMLLKKDKDCSKQNIIQFNDSPKHEQIELINQEDKCPNITVTKELLTSLDASTKHIQLPVFHQEFDPKFYTQQISLVSNSVNDNVDNFEIVDQDIPNIFYSHNAVDVQNNDCIFINTDEATENVSNLNTLPSIYTLEKTENNSRIAKKSNRRLRILKQRSKPKVAVEETIDKDQNHNESDSKINLIKNEFINNSENNEYFINTSNNNNNNIKKYICSTCLKGFRKPSDLERHIRTHTGERPFRCEKCGKSFSLKSTLKSHTKIHSSVLKKFTCPQCDCLFSTKGSLKVHIRIHTGSKPFQCPYCPMRFRTSGHRQTHCQVHLKEAERSNSTSSNIKKTKKSIKAKMDDKPNFETDEIDNLTSVENIRPIQPEENSNICYTLPDNQASNAINLDMLSTFPETILENIQQPEQDTSILEQLESGGLLIHDVFNNTDQSWYDVEMYESGQIINVHLASNSKTGSEDIPNELEAAIPCSVEFIQESNNPIQIEQENNDVLESSRNNQNICSYCKKTFEKPSKLERHLRVHTGDRPFICAICKKAFTQMNSLNAHMRTHSGNKPYKCLYCDHSTAQKGNLNIHLMKIHGVSGNQFGVLKTPILEEIEQKLNEHIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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