Nign028809.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- bab1
- Assembly
- GCA_029203775.1
- Location
- CP092098.1:540378-549170[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-18 3e-14 53.3 0.0 1 43 81 124 81 126 0.95 2 2 0.08 4.3e+02 1.5 0.8 5 15 222 232 221 246 0.87
Sequence Information
- Coding Sequence
- ATGGAAGATGAAGAAGAATCGGTCGGACCGTGTTTTTTTGGAAACTCGGACACGAGTGACCGACCGACCGGCCGTGCCAAGTTGCTAGAGTCCTCTCACGCTTGGCTCGGCGCCTCTACATCATCGATAGCAGACAGCTACCAGTACCAGCTGCAGTCGATGTGGCAGAAATGCTGGAGCACGAACCAGAGTCTCGTTCACAACCTGAGGTTTCGAGAGCGCGGGCCTCTTAAGTCGTGGAGGCCCGAGACCATGGCCGAGGCGATCTTTTCCGTATTGAAGGAAGGATTGTCGTTGTCGCAGGCCGCGCGCAAATACGATATACCGTACCCGACGTTCGTGCTGTACGCGAACAGGGTGCACAACATGCTGGGACCTTCGGCCGATGGCGGTGCTGATTTGCGACCGAAAGGACGCGGAAGGCCGCAGAGGATATTGTTGGGAGTTTGGCCGGACGAGCATATCCGGGGAGTGATCCGGGCGGTGGTTTTCAGAGACACGCCGCATCACATCAAAGAGGAAGCGCATCTGGCCGCCGCTTATCCGAGAATACATGATAGCATAAGCGTGCAGAGCTACTCGTCGATCCCGACGTCGATTCCCGGCGCCGTGCCCGGCTCGTGCGGCGGCGCGAACGGTCCGGACCCGTCCGTCTCGCCGGGCATGGCCGCGGCCGTCGCCGCGGTCGCGCAAGGCCTCCGCCAGCAGATGTGCAGCATGGTCGCCGCCGCGCAACACGGCGCCCCTCCGCCCCATCCGCACGAGGTGTCCGGCCTCGCCGGCCTCGGCTTCAACCCGAACCACCGCGGCGGCATCATAAGCCCGACGAGCGGCGGCATCATCAGCCCCGGCGGCATCGTCCGCAGCTTCAGTCCGGGCGCCGTGCGCAACTTCAGCCCGAACGGCCGCAACTTCGGCAGGTGGGGCGTCGACCGCCGCGCGGGACACGGTCGCGCACGTCTCAATCGCAGTTACTTTTCCAGTCCGAGCGGCAGGAACTTCAGCCCGGGCAGCGGCGGCAACTTCAGCCCGAGCGCGTCGCCGCAGGACCTGCGCGGCGGCGGCGTCGGGCCCGGCAGCCCGACGCAGTCGCACCTCGACACGCCGCTGTCGTCGCCGCTCGCGCTCGACCTGAACACGCTCGCCGGCAGCGTCGACGTCGGCCTGTCGAGCGGCATCGCGTACAAGCCGCCGAGGATGTACGCGCCGTCGCCGCGGCCCGAGAACCTGTTCCACGACGAGATCGAGGAGCTCGTCAAGACGAGCGTCGCCGGGCCGCTGCAGCTCACGTCGCCGAGGATAGCGACGCTCGGCGACGGCCCGAAGGACGTGCCGATCAAGCTCGAGCCGATGGCCGAGTGCCGGGGCGAATGA
- Protein Sequence
- MEDEEESVGPCFFGNSDTSDRPTGRAKLLESSHAWLGASTSSIADSYQYQLQSMWQKCWSTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTPHHIKEEAHLAAAYPRIHDSISVQSYSSIPTSIPGAVPGSCGGANGPDPSVSPGMAAAVAAVAQGLRQQMCSMVAAAQHGAPPPHPHEVSGLAGLGFNPNHRGGIISPTSGGIISPGGIVRSFSPGAVRNFSPNGRNFGRWGVDRRAGHGRARLNRSYFSSPSGRNFSPGSGGNFSPSASPQDLRGGGVGPGSPTQSHLDTPLSSPLALDLNTLAGSVDVGLSSGIAYKPPRMYAPSPRPENLFHDEIEELVKTSVAGPLQLTSPRIATLGDGPKDVPIKLEPMAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004588;
- 90% Identity
- -
- 80% Identity
- -