Ncya025739.1
Basic Information
- Insect
- Neoitamus cyanurus
- Gene Symbol
- -
- Assembly
- GCA_947538895.1
- Location
- OX384541.1:46685935-46694815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.064 9.4 7.8 0.7 2 23 205 227 204 227 0.93 2 18 0.0066 0.97 10.9 2.5 2 19 270 287 269 290 0.92 3 18 0.023 3.4 9.2 3.3 2 23 301 322 300 322 0.90 4 18 0.054 7.9 8.0 0.2 3 23 331 352 330 352 0.95 5 18 0.00049 0.073 14.4 0.8 1 23 358 380 358 380 0.95 6 18 0.015 2.2 9.7 1.0 1 23 386 409 386 409 0.95 7 18 5.6e-06 0.00082 20.5 2.4 1 23 414 436 414 436 0.98 8 18 0.004 0.59 11.5 1.7 1 23 484 506 484 506 0.96 9 18 0.034 5 8.6 2.1 1 23 511 533 511 533 0.97 10 18 0.14 21 6.7 2.0 1 23 549 574 549 574 0.96 11 18 6.3e-05 0.0093 17.2 0.2 1 23 580 603 580 603 0.94 12 18 0.013 2 9.9 0.2 1 23 608 631 608 631 0.97 13 18 0.0033 0.48 11.8 0.9 1 23 636 659 636 659 0.93 14 18 8.3e-05 0.012 16.8 2.4 1 23 662 685 662 685 0.98 15 18 1 1.5e+02 3.9 3.2 1 20 691 710 691 714 0.83 16 18 0.043 6.3 8.3 0.3 1 23 720 742 720 742 0.97 17 18 1.8e-07 2.6e-05 25.2 1.4 1 23 748 770 748 770 0.99 18 18 0.22 33 6.0 0.1 1 23 776 801 776 801 0.95
Sequence Information
- Coding Sequence
- ATGCCACTTCCGAGGAAGCGTGGACGCCCTCCAAAAGTGAAACCAGCAAAATGCCTTAATTGCTCGGTTGAAATGCGAGAACCTCATCAGCTCATTTTCGATGAGAGTGGCATTGAATTAGGACTGCAAAAATTGGTTTCCACTTGCTTTTCGCTGCGCATTGTAAAGGATAAAAATGAAATACAGGCTCTATGCAATGATTGCCTTAATCGGCTGATTGATGTATTTGATATTATGCAAAACAAAACGCAAGATAATCCTGGGCCGTCTATCGCCAGGAAATCGCCGGAACTAGTGGAAGTGAAAGAGGATGTTGACAGTGATGATGTTGAAACTTATGAGGACTTGTATGAAATTATCGAAGGATCAGAAATAATTGACGTTAAAAATTCAGATCAATCTGAATTAGACGATGAACATCAAGCGCAACAAGAAGTCGCTAGCGAGTTATTGAGCCAGCATGGTGAGGCCGACAATACACCAACTGCAGATATTCGGGAATTCGAAAGTATCGATTATTTGGAAGATTTCGATGAGAACATCGACATTAGAGAATATAAGATTGGAGTCTTGCGTAATACTCTTGCACACGTATTGCTTCCCGAAAGTATTCAGTGTCGGTTATGCTCTGAAAGTTTTGAAAAACACTCTGATGTGATAAGTCACACGGAGAATGTACATTGTGTCGAGGATTTTGCCTATCCTTGTGTGATTGACGAAAATTGTGAACCGCAGAAAACCGCAATGGACCTTTCGTTGCACATGGTTTTCTCTCATTATGACTTGGAAAAATTAGCTATCTATACCCAATGCCCTGAATGTGATAAGAGATTTAGCAATTTCTTGCTGTACAACAAGCATTCGTGCTATACCGGCGCAAAGATCCCACGAAGCGCAACAGAATGTGAGACTTGTGGTAAAACATTCAAATCAAATAAGAGATACCGCTTCCATCAGAATTTTCATCAAGAAAAACGACGTCCAAAAGCATGTTTTATCTGCGATAACCTGTTTAGGGATGAAGATGAATTTTTCGAGCATATTATGTATCAGCATGATAAAAATCTTGGTTTTTTCTGCTTAAGATGTGACAAGGCTTTTACCAGTGAGCTGAACTTAAAGAACCATGAAAGTATACACAAAGTAAAGCGGCAGTATAATTGTAAGCAATGTAGCAAATCGTATCTCTATAACCAGCTTCTAAAGGATCATATGGTGTCAGCACATGGAATAAATCCCTTCAAATGCCATATTTGTGGCAAAACCCTGATTAAGAAAACACTTTTGAACAAGCACATTTTATCACATAGCAAACCTCAATCAACTGAAGTTACGTCTTGCAGTTGTTGTGGTTTAGTTTTTGAAAAACCTGATGAAAGTGTGGAACACTTTGAACAACACAATGAAGGCGATGAACCGAGCGTTGTAACTGAAACGCTAGAAATAGCGTACTGCTGTGAATATTGTGAGCTTGCCTTCAACTCAATCGATAACATGACTACTCATCGAGAGCAACACGATAAAATGAGATATTTCTGCGACTTATGTCCTTTATACTATGATCAGTATAAAAAATTGAAAACCCATAAATTAACTCACATTAACTACGTCGACAAAAGAATCACCTTCCCTCTTATAAGGCACTATGTTTGCGATTTTCCGGACTGTACAATGAGTTACTTGCAGTGGACTAGTCTTCGGTCACATAAGAGGCACAAACACTGTGATCAGAAAAGTTTTCAATGCCCTAAATGTCCTGAAGGATTCACAGATGTACAACTATTTAAAAAACATATGGAGGATGTCCATAACAGCAGTGCCTTCAAATGCCAGTTTTGCAACATAGACTATGGCAGTAAAATGGCCCTAGCGGTTCATATTGCCAGACGGCATAATGCAAGTCGTTTTCATTGCGATTCTTGTGATCAAAGCTACGCGACGAAAGTGCTCTTGGAGACGCATAGGGACAATGTTCACAGCAATTTCACGTGCAAAATCTGCGGGAAAATACTAAAAAATATGAAGAACTATCAGGTTCATCATAGAATGGTTCACGAAAAAGAGAAAAGGTATTTCTGCAAGTACTGCAATAAAGGGTATTTTAACAACTGCGACAAAATGGAACATGAAACAGCGGTACATGAGAAAGTGAAAAAATACGCCTGCGACTTATGTCCCTATTCAGCGGTGTACAAAGAATGTTTAGTTGTTCATAAGAGGGCACACCGGAATGAAACGCCTTACGTTTGCAAGCTGTGTAATAAAGGGTTCCGTCGAAGTTATGCCCTTCAGGTTCATATGAAGCGGCACTACAATACTAGGGAGTTTGTTTGTGGCTATGAAGGCTGTGCGGCTACCTACACAAATCAAGGACTTTTGAATTTTCATATTAAAACGGCACATTTAGAGGATGCTAATAACGAACCAAAAGCAAAGCGGCAACGACTAGTTGCGGACGGTTATCAGCGGCCGCGGTATGAAGGCCCTCCAGCAGAATATTTTGTTGATGACGACGATGGCTTAGACGACGGAGTTATAGGAGAACCTAACAACCAAGTCTCCAAAGAATCCGTTGAAGTTATTACCGATGACAATATTGAATATATTTTGAAGGACGAAGAATGTGCATCAGCTGTTATTGTGAAAACTGAATCTGATCATGACTACATTGTCCGTGTGGACGATAATAAAGCTTACGAGAATGAAATTGACGAAGTTTTCGAAGTTGTTATGCAAGATATATAA
- Protein Sequence
- MPLPRKRGRPPKVKPAKCLNCSVEMREPHQLIFDESGIELGLQKLVSTCFSLRIVKDKNEIQALCNDCLNRLIDVFDIMQNKTQDNPGPSIARKSPELVEVKEDVDSDDVETYEDLYEIIEGSEIIDVKNSDQSELDDEHQAQQEVASELLSQHGEADNTPTADIREFESIDYLEDFDENIDIREYKIGVLRNTLAHVLLPESIQCRLCSESFEKHSDVISHTENVHCVEDFAYPCVIDENCEPQKTAMDLSLHMVFSHYDLEKLAIYTQCPECDKRFSNFLLYNKHSCYTGAKIPRSATECETCGKTFKSNKRYRFHQNFHQEKRRPKACFICDNLFRDEDEFFEHIMYQHDKNLGFFCLRCDKAFTSELNLKNHESIHKVKRQYNCKQCSKSYLYNQLLKDHMVSAHGINPFKCHICGKTLIKKTLLNKHILSHSKPQSTEVTSCSCCGLVFEKPDESVEHFEQHNEGDEPSVVTETLEIAYCCEYCELAFNSIDNMTTHREQHDKMRYFCDLCPLYYDQYKKLKTHKLTHINYVDKRITFPLIRHYVCDFPDCTMSYLQWTSLRSHKRHKHCDQKSFQCPKCPEGFTDVQLFKKHMEDVHNSSAFKCQFCNIDYGSKMALAVHIARRHNASRFHCDSCDQSYATKVLLETHRDNVHSNFTCKICGKILKNMKNYQVHHRMVHEKEKRYFCKYCNKGYFNNCDKMEHETAVHEKVKKYACDLCPYSAVYKECLVVHKRAHRNETPYVCKLCNKGFRRSYALQVHMKRHYNTREFVCGYEGCAATYTNQGLLNFHIKTAHLEDANNEPKAKRQRLVADGYQRPRYEGPPAEYFVDDDDGLDDGVIGEPNNQVSKESVEVITDDNIEYILKDEECASAVIVKTESDHDYIVRVDDNKAYENEIDEVFEVVMQDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -