Basic Information

Insect: Neoitamus cyanurus
Gene Symbol: ham
Assembly: GCA_947538895.1
Location: OX384546.1:3155998-3175765[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.1 1.6e+02 3.9 1.5 1 22 83 104 83 106 0.89

2 9 0.0003 0.044 15.1 1.5 1 23 113 136 113 136 0.94

3 9 6.4e-08 9.5e-06 26.6 2.4 1 23 142 164 142 165 0.96

4 9 8.6e-07 0.00013 23.1 1.7 1 23 171 193 171 193 0.95

5 9 2.1e-05 0.0032 18.7 5.0 1 23 199 221 199 221 0.99

6 9 0.00013 0.019 16.3 1.1 2 21 229 248 228 249 0.95

7 9 3.4e-09 5e-07 30.6 1.3 1 23 598 620 598 620 0.99

8 9 2.6e-07 3.9e-05 24.7 1.7 1 23 626 649 626 649 0.97

9 9 2.3e-05 0.0034 18.6 6.8 1 23 655 677 655 677 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.1	1.6e+02	3.9	1.5	1	22	83	104	83	106	0.89
2	9	0.0003	0.044	15.1	1.5	1	23	113	136	113	136	0.94
3	9	6.4e-08	9.5e-06	26.6	2.4	1	23	142	164	142	165	0.96
4	9	8.6e-07	0.00013	23.1	1.7	1	23	171	193	171	193	0.95
5	9	2.1e-05	0.0032	18.7	5.0	1	23	199	221	199	221	0.99
6	9	0.00013	0.019	16.3	1.1	2	21	229	248	228	249	0.95
7	9	3.4e-09	5e-07	30.6	1.3	1	23	598	620	598	620	0.99
8	9	2.6e-07	3.9e-05	24.7	1.7	1	23	626	649	626	649	0.97
9	9	2.3e-05	0.0034	18.6	6.8	1	23	655	677	655	677	0.99

Sequence Information

Coding Sequence: ATGACCACCGATAAAGCGAGCGGGGGCTTGTGGCACTGCAGCAGATACTCGTACCTATGTGCGAACCACTCCCGCCACAATGCGTACATGACTAACGCCTGGCTTTCCTTCATTTTTTCAGGATCCCAGCACAGCGGGACCACAGGTGAGGACGACTTCAACACTTCCAACGATCTAGAGAACAACAAATCAGCGAACAACAGTAAAGATCGCGATCAGGACTCGGACGACGAGGACGGAATTGACTTTCGGTGCGTGGTTTGTGAGCGGCAGTGCCACGATATCGATCATTTGGATGACCACTTGGTCGCCGCACATCATTACCCAAAGGACGCGTTCAGGTGTGAACTCTGCCCCAAGAGCTACTGCTACCGGCCCTCGCTCCTTCGACATCGAGCCCTTGTGCATGGTGAACTAAGAAAGTATCCCTGTGAGAATTGCACAAAGGTATTTTGTGATCCATCAAATCTACAACGACATATTCGTGCCCATCACGTTGGTGCCCGAAGTCACGCCTGTCCAGAGTGTGGCAAAACGTTTGCAACATCATCTGGACTGAAGCAGCACACACACATTCACTCATCGGTGAAGCCATTCCAGTGCGAGGTCTGCTTCAAGGCATACACGCAATTCTCGAACCTGTGTCGACATAAACGGATGCACGCCGACTGCCGCATGCAAATAAAGTGCACTAAGTGCGGACAGAGTTTTAGCACTGTGACATCACTGTCTAAGCATAAGCGTTTCTGTGATTCAACAACGATACCACCTCACCATTCTCACCAGCAGCAGGGCCCACCGCCACCGTCCCAAGGGATCTCATCAGCTGTACCACCAGCGATGACTACGCCACCTAATCCATTCTTCATGTTTCGTGGACCACCACCCTTCTTTCCGCCTGGATTTCCTTCGTACGGCCTTCATGGAATGTTCCCACCTAGTCCAGCACAAGCTCCCAGTTTCCCGCTTCTGTTTCCTAAGCCCAGTCTCGATATGACTATGGCGGAGAAGGACAGAATATCCCCGACCAGGCACATGTCATTGAACCATTACGGGAGCAGAAGTTCACATGAGGACAGTAGATATAGCCATTTACGAGCATCACCTGCAAGACCAATTCCTGTCCCCCAAAAACAACAGCCGGTGCAACTACCCGTGCAGCAGCCACATATCAGCAATAGCCACCCTGTTAAAATAAATCACCCATCTCCTAGGAGTCGACTTTCGAGGAGTTCCGATGATGAAACTAATTTTTCGCCATTGGACATGAAAATTCAGTCGATGGATGGCGAGGATCAGATCATCAAGGATGAAAGAACCTCCCCCGATGATAAGAGCCATATTAATGTGACATCGCCTTCCCCTACGCAAGAAGTAGGTCAGACGGAGCAACCGCTTGATTTGTCGGTTACTAGAAAACGTGAAAGAAGTCGAAGTCCAACACCAGACCCTGTTCCCGTTGAGCGGGAAAAATCACTCCAGTCTTACCGGGCAAGTCCTACGCCATCGGTGTCCCCTGGACCAACACCTTCACCATCACCCCCTGGACCTCCAATGGCTTATCCCCGACCTATTCATCCCGTATTGTTAGAAGCCATTTATCGACCTACAGCTGGTCTAAGCGCGGCCTTTCAACGGCCCTTTCCTTTTTTAGGGCCAATGGGCGGTCGGCCAGGATTTGACCACATCCTCCATCGCAATGGGCCGTTTGCACCAAAACCATTCCACGAAGCTTTAATGGCTGCCGGCGGACTTTCGGGAGGTATAGGCACTGGAAAGATCAAGGACCGATACACGTGCAAATTCTGCGGGAAAGTATTTCCGAGGTCAGCTAATCTAACCAGGCACCTGCGCACACACACGGGCGAACAGCCATACAAGTGTAAGTACTGCGAAAGGTCATTCAGCATATCCAGCAATCTGCAGAGGCATGTACGGAATATACACAACAAGGAGCGGCCTTTCAAGTGCCACCTGTGTGACAGGTGCTTTGGGCAACAGACTAATTTGGACAGACATTTGAAGAAACACGAAGCTGACGCCAGCGGAATTGGAATTGGCGTTGGGGACTCTCCTTCATCAAATGAGGCAGACCGCGAGGATGCGTACTTCGATGAGATCAGATCCTTCATGGGTAAGGTGACATATACGGGCGGTGTCTACACTCCAGTCAGTATGGGCGCTGGCGAAAACGAGACAGAGGACGGAAGCGATGTGGAAAACGAAGCCATTACCGACAAAGATGCTCTTAACAACAACGAGGCCACTATAGAGGTCTCCACATAG
Protein Sequence: MTTDKASGGLWHCSRYSYLCANHSRHNAYMTNAWLSFIFSGSQHSGTTGEDDFNTSNDLENNKSANNSKDRDQDSDDEDGIDFRCVVCERQCHDIDHLDDHLVAAHHYPKDAFRCELCPKSYCYRPSLLRHRALVHGELRKYPCENCTKVFCDPSNLQRHIRAHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCTKCGQSFSTVTSLSKHKRFCDSTTIPPHHSHQQQGPPPPSQGISSAVPPAMTTPPNPFFMFRGPPPFFPPGFPSYGLHGMFPPSPAQAPSFPLLFPKPSLDMTMAEKDRISPTRHMSLNHYGSRSSHEDSRYSHLRASPARPIPVPQKQQPVQLPVQQPHISNSHPVKINHPSPRSRLSRSSDDETNFSPLDMKIQSMDGEDQIIKDERTSPDDKSHINVTSPSPTQEVGQTEQPLDLSVTRKRERSRSPTPDPVPVEREKSLQSYRASPTPSVSPGPTPSPSPPGPPMAYPRPIHPVLLEAIYRPTAGLSAAFQRPFPFLGPMGGRPGFDHILHRNGPFAPKPFHEALMAAGGLSGGIGTGKIKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCHLCDRCFGQQTNLDRHLKKHEADASGIGIGVGDSPSSNEADREDAYFDEIRSFMGKVTYTGGVYTPVSMGAGENETEDGSDVENEAITDKDALNNNEATIEVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00424852;
90% Identity: iTF_00936759;
80% Identity: -