Basic Information

Insect: Neoitamus cyanurus
Gene Symbol: -
Assembly: GCA_947538895.1
Location: OX384547.1:9389456-9396474[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0056 0.83 11.1 1.4 1 23 130 153 130 153 0.91

2 12 0.1 15 7.1 0.2 1 20 219 238 219 240 0.94

3 12 3.5e-06 0.00051 21.2 5.0 1 23 334 356 334 356 0.98

4 12 3.9e-05 0.0058 17.8 6.2 1 23 362 384 362 384 0.97

5 12 4.5e-05 0.0067 17.7 3.4 1 23 390 413 390 413 0.91

6 12 5.9e-05 0.0087 17.3 2.5 3 23 425 445 424 445 0.98

7 12 9.1e-05 0.013 16.7 1.0 2 23 451 472 450 472 0.97

8 12 1.9e-06 0.00028 22.0 0.4 1 23 479 501 479 501 0.96

9 12 1.4e-06 0.00021 22.4 0.7 1 23 507 529 507 529 0.98

10 12 6.1e-07 9e-05 23.5 0.7 3 23 537 557 535 557 0.96

11 12 6.1e-07 9e-05 23.5 1.5 1 23 563 585 563 585 0.99

12 12 0.00069 0.1 13.9 1.0 1 23 590 613 590 613 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0056	0.83	11.1	1.4	1	23	130	153	130	153	0.91
2	12	0.1	15	7.1	0.2	1	20	219	238	219	240	0.94
3	12	3.5e-06	0.00051	21.2	5.0	1	23	334	356	334	356	0.98
4	12	3.9e-05	0.0058	17.8	6.2	1	23	362	384	362	384	0.97
5	12	4.5e-05	0.0067	17.7	3.4	1	23	390	413	390	413	0.91
6	12	5.9e-05	0.0087	17.3	2.5	3	23	425	445	424	445	0.98
7	12	9.1e-05	0.013	16.7	1.0	2	23	451	472	450	472	0.97
8	12	1.9e-06	0.00028	22.0	0.4	1	23	479	501	479	501	0.96
9	12	1.4e-06	0.00021	22.4	0.7	1	23	507	529	507	529	0.98
10	12	6.1e-07	9e-05	23.5	0.7	3	23	537	557	535	557	0.96
11	12	6.1e-07	9e-05	23.5	1.5	1	23	563	585	563	585	0.99
12	12	0.00069	0.1	13.9	1.0	1	23	590	613	590	613	0.97

Sequence Information

Coding Sequence: ATGGAACTCCAAAATGAGCATACAATGAAAATTTGTCGAACATGTTTACGGATTGACACAGACGCAAATCTCCAAAATCTCTTCCCAAAGGGAACATCGTCAGAGGAGGAAACACCGCTCCTAGACATGATTATTGAGTGTAGCGATTACATGGTAAAGGAAGACGATGAGTATCCGAATCAAATCTGCAAGAAATGCTTGGAAGATGTAAAAATTGCCTACGATTTCAAAAAGCAGTGTGAAAAATCTTACGAAATACTAACATCTGTAATAGAAAAATATAAGAAAAATGAACCAAATAGCAGCCAGATCTCGGATGAAGTAATCATTAACGAACTTCGCGCGAAGCCAGAAAATACGGGACTCGAAACAGAAGTTTTAGTTTATTACCCATGCGAGAAATGCAATGATAAGTTTTCTACGTTTGATAGTTTAAAGAATCATTTTGAAGAGAATCATTCAGAAAAAAAATGTCGGGTGTGTTCAAAAACCATCACAAGTATACGAGAAGAGGGCACTGAAGTATCTGAAAGCAACGAGGACTATGCCGCATCATCCAATGACCTCTGTAAAACATGTAATGATTTTACTGATATTGGTAATTGTGATGATGAGGATGACGATGGCAAGGATGATACCGAAATACCTTGGCAGTATATGTGTGCAGTTTGCATGCAATCCTTTTCATCGGCGGAGTCTGTTAAAAATCACACATGCGAAGAAAACTGTACTACATCCGTAAAATCAGAGAAATCACTTGAGGAATCAGGCATAGAAGATGTTGAGAACCCTCTTGCGTTAGAAACATTTAGTTCGTCTAGTAAATTTGGGAACTCAGACACTGAATCATTCGATGCTGATCATGAGGACAAAGATGTATGCACTACCGATGACGATGGAAAACCCCTTTGTGAGTTGCAAGGTAAAGTGGATAAAAGTGCAGAGAATAGTAAAAACACCAAAAAGCATAGGAAATTAAATAAGCGAAAAAGAAAGATACACAGATGTGATGTGTGTACAAAAGTTTTCTCAAGGTCAACACATTTGAAGCGGCATGCTTTAACGCATTCAGACGAAAAACCTTTCTCCTGCACCGTTTGCAATAAAGGCTTCACAAGACTGGATCATCTGAACATTCACATGCATCATCACTCTGAAACAAAACCTCATGTATGCGATATTTGTAAACGTGGCTTTACAAGATCGGAGCATTTGAGAAAGCACAAGGAGGCTCGACATGGGAATAAAGTAAAAACGCCTAAGACCGAGTTTTGCGAAATTTGTAAAAAGGGATTCACAACGGTTAAGTACCTTCATATTCATATGAGAAGCCATACGGACCGTATTTGGAGTTGCAAGCTTTGTTCCGAAAAATTCAAAACGAAACCAGAGCTTACTGCGCATTCTAAAACCCATGCAGCTAGTGAAAAACCATTTTTGTGCTCAGAGTGTGGCTTGCGATTCGTCCGTAATGACTATTTGGTCATACATATGCGACGTCACAAAGGCGAAAAACCGTACAAATGCAAGTTTTGCGGCAAGGGTTTTCCAAGGGCTACAGATTTAACCGTACACGAAAGATATCACACAGGGGAGAAGACACATTTGTGTACTATCTGCGGTAAGGGATTTCAGCGAGCTTATAACCTTCTTGTCCATATGAGGGTTCACACAGGTGAACGTCCTTATCAATGTCCACATTGTTCCAAACGATTTGCGCAAGGAAATGATTTGAAAGCTCATATACGCAGGCACACCGGTGAACGTTTTAAATGCGACATTTGTGGAGATGGGTTTATTCAAGGATATCATCTCACCCAACACAAGAGAAACGTGCATGGGATCGATATGAAGTCACACATTCGTCGAGTCGAAAAATATGTTACTCCTACGGAGCAACAAAAACAAATGGAGGCCTTACAAACTCAAATGTCGGAACCTAAGCCGGATCCTGACCAAATTGAAGCAGACGCATCTCAAGGTCATGATGAGATTATACTTGGAGAAGTGGATATTATTAAAATAGAGGATGAACCTATGGACGTTGCAGAGGCCATAAGCCTGAGTGCGGAACAGGCAGAGATGCTTGAAAATGGCCAAGAAATTACAGTGGTTGGCCCTAACAATGTCACTATGATATCATATTTCAGTCCAACGGAAACTAAAGTTAAATTCGATCCCAATTCGAGTGAATAA
Protein Sequence: MELQNEHTMKICRTCLRIDTDANLQNLFPKGTSSEEETPLLDMIIECSDYMVKEDDEYPNQICKKCLEDVKIAYDFKKQCEKSYEILTSVIEKYKKNEPNSSQISDEVIINELRAKPENTGLETEVLVYYPCEKCNDKFSTFDSLKNHFEENHSEKKCRVCSKTITSIREEGTEVSESNEDYAASSNDLCKTCNDFTDIGNCDDEDDDGKDDTEIPWQYMCAVCMQSFSSAESVKNHTCEENCTTSVKSEKSLEESGIEDVENPLALETFSSSSKFGNSDTESFDADHEDKDVCTTDDDGKPLCELQGKVDKSAENSKNTKKHRKLNKRKRKIHRCDVCTKVFSRSTHLKRHALTHSDEKPFSCTVCNKGFTRLDHLNIHMHHHSETKPHVCDICKRGFTRSEHLRKHKEARHGNKVKTPKTEFCEICKKGFTTVKYLHIHMRSHTDRIWSCKLCSEKFKTKPELTAHSKTHAASEKPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHMRVHTGERPYQCPHCSKRFAQGNDLKAHIRRHTGERFKCDICGDGFIQGYHLTQHKRNVHGIDMKSHIRRVEKYVTPTEQQKQMEALQTQMSEPKPDPDQIEADASQGHDEIILGEVDIIKIEDEPMDVAEAISLSAEQAEMLENGQEITVVGPNNVTMISYFSPTETKVKFDPNSSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00936750;
90% Identity: -
80% Identity: -