Ncya024429.1
Basic Information
- Insect
- Neoitamus cyanurus
- Gene Symbol
- ZIPIC
- Assembly
- GCA_947538895.1
- Location
- OX384541.1:31979282-31980793[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00063 0.093 14.1 0.2 3 23 13 33 11 33 0.98 2 16 0.37 55 5.3 0.1 2 12 51 61 51 64 0.84 3 16 0.0046 0.68 11.3 0.6 3 23 94 115 93 115 0.91 4 16 1.4 2e+02 3.6 9.7 1 23 121 143 121 143 0.95 5 16 0.00012 0.018 16.3 1.0 1 23 149 171 149 171 0.98 6 16 2.1e-05 0.0032 18.7 1.4 1 23 179 201 179 201 0.96 7 16 0.0019 0.27 12.6 0.5 1 23 208 230 208 230 0.98 8 16 2.8e-07 4.2e-05 24.6 1.1 1 23 236 258 236 258 0.99 9 16 0.00049 0.072 14.4 0.3 3 23 268 288 266 288 0.96 10 16 0.00082 0.12 13.7 0.5 1 23 295 317 295 317 0.97 11 16 2e-07 2.9e-05 25.1 3.0 1 23 323 345 323 345 0.99 12 16 1.1e-05 0.0017 19.6 0.1 2 23 351 372 350 372 0.97 13 16 2.6e-07 3.8e-05 24.7 1.6 1 23 380 402 380 402 0.98 14 16 0.0019 0.28 12.5 3.4 1 20 408 427 408 428 0.96 15 16 1.2 1.8e+02 3.7 6.9 1 23 437 459 437 459 0.96 16 16 3.6e-05 0.0054 18.0 4.2 1 23 463 485 463 485 0.98
Sequence Information
- Coding Sequence
- ATGATGTTTGGGGAAGATTGGCTGAAATCTTTCGGTTGCGACGATTGTGGCATAGAATTCGAGGACATCAAGAGTTTTATGACACACAGAAGAATTCATTTTGCATCAGCACCTAATATTCAACCAAAAGTAAAGCACCTTAACCAAGGCGTTTGTCCACATTGTAATTTGTCGTTTTATGTTAAAACCTTGAGCCCTAAAGAAGCCGACCGATGGAGGAAACCTAAAAAGCTGAAGCCAGGGAAGAAAAAGCGATTTAAAGTAAGGGAATGCAGATACTGCTTGAAATGCAAGATTTCATTCCGTAATGCAAATGAGTTGCTCACTCATTCAAAAGACGTCCATGGTGTCGAACGCCCGTACAAGTGTAAAAAATGTAACTTCACTACTTCTTTTTATCATCATATAAAAAGGCATTCCTATTCCCATAATTATGCAAAGCTTTACTCCTGCCATCTCTGCCCAAAGGAGTATACAACAAAAACGTCATTAGATGGGCATTTGCTGATACATTCGGAAGTTGATATAAAATCACACGATTGCGAGTTCTGTGGCAAAAAATTTCCAATTCTTTCCCTTCTTAAAAGGCATCTGAAGATACATGCGCCTGCCCAGAAGATTTTCAAATGTGACTTGTGCCCCAAAGAGTTTGCCTGGAAGAATAGTTTAAAATTACACAACTTAACTCATACTGGCGAAAGGCCCTATCAATGTCCTATATGCCAGAGGGGGTTCACGCAACCGTTTAAATATAGACGACATATGCAGGTACACAATCAGATTATAGGTAAAGTGATCGATTGCGAATTTTGTAATAAACAATTCCTCACACCCTACCTGCTGAAAAAGCATATGGTTGTGCACGATAATAGTGGAGTTCAATTTATTTGTGACGTCTGTTCGAAACCGTTTCTTCGGGAGGAAAACCTGAATTTGCATAAAAAAAGTCATAGTGGTAATTTTCCATACCAATGCGATGACTGCGGTAAGCAGTTCAAGAATAGACACGCATATTCCAGGCACATGATAACTCACACTGAGGACCCCGTGGAATGCGAACAATGCGGAAAGATGTTCCCTGTAATGTACAAGCTGGAAAGGCACATTAAAATACACACTCGTGAGGAGAATGACATGTATAAGTGCGAGATTTGTTCCAAGTCATTTACCAGAAAACAAACCCTAAAAGATCACCTTCTAATACATGAAGGAAAAGAACCGTATAGCTGCAAGCATTGCGGAAAGAAATTTCTTAAGCAAAAATATCTTAAGAGTCATCTTGATCCTGACAAGAATCCTGGGAAGCGCTTCAGGTGCAAAAGCTGTTCTAGCACGTTTACCAATAAAAGTTGTTTCTTATTTCACGCGAAAACTCACAAAAAGAAGTATTTTTGCGACATATGCAGGAAAAAGTTTTCAACTTCATTCGGATTTAAAAAACATTTAAATAAGCATACGAAGGACGAATCGACGCAGCAGTGTGGTGAATTTGTTGTCAAAGAAGAAGTGTAA
- Protein Sequence
- MMFGEDWLKSFGCDDCGIEFEDIKSFMTHRRIHFASAPNIQPKVKHLNQGVCPHCNLSFYVKTLSPKEADRWRKPKKLKPGKKKRFKVRECRYCLKCKISFRNANELLTHSKDVHGVERPYKCKKCNFTTSFYHHIKRHSYSHNYAKLYSCHLCPKEYTTKTSLDGHLLIHSEVDIKSHDCEFCGKKFPILSLLKRHLKIHAPAQKIFKCDLCPKEFAWKNSLKLHNLTHTGERPYQCPICQRGFTQPFKYRRHMQVHNQIIGKVIDCEFCNKQFLTPYLLKKHMVVHDNSGVQFICDVCSKPFLREENLNLHKKSHSGNFPYQCDDCGKQFKNRHAYSRHMITHTEDPVECEQCGKMFPVMYKLERHIKIHTREENDMYKCEICSKSFTRKQTLKDHLLIHEGKEPYSCKHCGKKFLKQKYLKSHLDPDKNPGKRFRCKSCSSTFTNKSCFLFHAKTHKKKYFCDICRKKFSTSFGFKKHLNKHTKDESTQQCGEFVVKEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -