Ncya006360.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neoitamus cyanurus
Gene Symbol
Znf629
Assembly
GCA_947538895.1
Location
OX384544.1:13494683-13497129[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.51 75 4.9 0.8 2 23 255 277 254 277 0.93
2 15 0.18 27 6.3 4.5 2 15 293 306 292 311 0.83
3 15 3.5e-08 5.2e-06 27.4 2.2 1 23 320 342 320 342 0.99
4 15 1.3 2e+02 3.6 0.7 2 23 417 439 416 439 0.89
5 15 0.062 9.1 7.8 2.6 2 15 455 468 454 473 0.82
6 15 3.2e-07 4.7e-05 24.4 0.7 1 23 482 504 482 504 0.98
7 15 5.7e-07 8.5e-05 23.6 2.9 1 23 510 532 510 532 0.99
8 15 0.00048 0.071 14.4 4.4 1 23 538 560 538 560 0.98
9 15 1.4e-05 0.002 19.3 0.5 1 23 566 588 566 588 0.99
10 15 0.00017 0.025 15.8 2.8 1 23 594 616 594 616 0.99
11 15 1.1e-06 0.00016 22.8 0.4 1 23 622 644 622 644 0.98
12 15 1.9e-07 2.8e-05 25.1 1.1 1 23 650 672 650 672 0.98
13 15 0.00021 0.031 15.6 3.1 1 23 678 700 678 700 0.99
14 15 0.00012 0.018 16.3 3.9 3 23 708 728 706 728 0.98
15 15 1.3e-06 0.00019 22.5 0.5 1 23 734 756 734 756 0.97

Sequence Information

Coding Sequence
ATGTCCAAGAAATGTTTAGTTTGCAATGCACCTCATTTAGAAAAGATCAACATACTTCGGCACTCTGAAGGACTGGATTCTAAGTTAAAGTTTTTGCTGGGACTACAGGCCAATGAAGATGACTATCTCTGCAAGAGGTGTTGCGACGAAGTTGCAAATGCATTCCATTCCAAGCAAAAGTCCCACCAATGCAGCAAGCCAGAGCCAGAGTTATTTGGGGGTGATTGGGCGGTTATTAAAGAGGAAACTGATCCTGGTGACCAAATTGAAAATGCAGTCTCCGCGAGGGATCCAGTGGTAAAAATTGAACCGGACTTCGAGGGGGCCTTGAAGGTGAATGATGAGACCACTCACGTAAGGTTCGATGAAAGGTTGAAACCTGACTTTGACTTGGAATTAGAACCAAAGCTAGAGCGAAGTGCAGACAAGGAATTCAAATTTGTAGCACAGAGAATTGTTTTGGCTACGGTTGATGGTGAAAGCGAGTCTATAAGGCTAAAGGAAGCTGGAAGCTCCTGGAGCGTGCCACAGGAGGATTTCAACATTGTTACCCCAGATGCTGTCTGTAATCAGAATAGTAGCCATAGTAGTGAAGGTTGCTTGAAATACTTCAAAAGGGAGAAGTCAGTGGATATCGAAGACAGTACCGATGAGGAGAAGCTCAGCGATAAGAGAGAAGACAGAGTGACAAATATGAAAGCAATTGATAATATAGGATCGAAAGAGGTTCCGGTATCTGATCGCCAACACAATCCAATAATTTACTGTGAAGTGTGCAGCAAATCCTATCTTCAACTCGGTCGCTTCCAAAATCATTTCAAACGGGAACATCCGGAATTTGCTATCAAAAATCCCTCACTATTGGAAAACCCATGCAAGTGTTCCTACTGTTCTAAAACTTTTAAGCACAGCGTGGAACACCAGGTACATGGAGGAACGAGcactaaagtgaagccttacgtgtgtaatgaatgcgggaaaagttataccaccacttctcatcttaaaatccaccaaaggattcatactggCTTCAATATGTATACCCCGGATGCGGCCTGTAAGCCGAACGGTAGCAAAGTTTGTTTGCAATACTTCAAAAGGGAGAAGTCAGCTGATATCGAGGACAGTACCTATGAGGAGAAGCTCAGCGGGAAGAGAGGAGACATAGTTAAAAATAGAAAAGCAAGTGATAGTTTAGAATCGAAAGAGGTTCCGGTATCTGATCGCCACCACAATCCAATCATTTACTGTGAAGTATGCAGCAAATCCTATCTTCAAATCGGACGCTTCCAAAATCATTTCAAACGGGAACATCCGGATATTACTATCAAGAATCCCTCACTTTTggaaaatccgtgcaagtgctcttactgttctaaaacgttcagtgacaatatcgatcatcaggctcacggtgggacgagcactaaagtgaaaccttacgtgtgtaatgaatgcgggaaaggttttactaccactgctcatcttaaaatccacgaacggattcatactggagaaaagccatacaagtgttctcactgccctaaaagttttgcgaccagtgatcgactccgaaaccacgcaagaacgcatacgaatgagaaaccatacatgtgctctgaatgcgggaaacattttagcacaacttgtatccttaaagttcatcaaaggattcatactggagaaaaaccgtacaagtgctctgaatgcgggaaaggttttataacctcttatatacttaaaaatcatgaaaggatccacacgggagaaaaaccatacgaatgttcctactgctccaaaacttttgcgagaaccgaccaacaccaggctcacgtaagaacgcatacgaatgagaaaccatacgtgtgctctgaatgcgggaaacgatttagcaccacgtgggtacttaaagttcaccaaaggattcacactggcgaaaaaccctacaagtgctctgaatgtgggaaaggttttacaacctcttctaaacttaaagatcatgaaaagattcacactggagaaaaaccatatgagtgctcctattgctccaaaacttttgcgagaaccgaccaacaccgggctcacgtaagaacgcattcgaatgagaaaccatacgggtgctctgaatgcgggaaatgtttcagcaccacttgtgtgcttaaaattcaccaaaggattcacactggagaaaaaccatacaagtgctctgaatgtgggaaaggttttataacctcgtctaaacttaaagatcatgaaagcatccacaatgtataa
Protein Sequence
MSKKCLVCNAPHLEKINILRHSEGLDSKLKFLLGLQANEDDYLCKRCCDEVANAFHSKQKSHQCSKPEPELFGGDWAVIKEETDPGDQIENAVSARDPVVKIEPDFEGALKVNDETTHVRFDERLKPDFDLELEPKLERSADKEFKFVAQRIVLATVDGESESIRLKEAGSSWSVPQEDFNIVTPDAVCNQNSSHSSEGCLKYFKREKSVDIEDSTDEEKLSDKREDRVTNMKAIDNIGSKEVPVSDRQHNPIIYCEVCSKSYLQLGRFQNHFKREHPEFAIKNPSLLENPCKCSYCSKTFKHSVEHQVHGGTSTKVKPYVCNECGKSYTTTSHLKIHQRIHTGFNMYTPDAACKPNGSKVCLQYFKREKSADIEDSTYEEKLSGKRGDIVKNRKASDSLESKEVPVSDRHHNPIIYCEVCSKSYLQIGRFQNHFKREHPDITIKNPSLLENPCKCSYCSKTFSDNIDHQAHGGTSTKVKPYVCNECGKGFTTTAHLKIHERIHTGEKPYKCSHCPKSFATSDRLRNHARTHTNEKPYMCSECGKHFSTTCILKVHQRIHTGEKPYKCSECGKGFITSYILKNHERIHTGEKPYECSYCSKTFARTDQHQAHVRTHTNEKPYVCSECGKRFSTTWVLKVHQRIHTGEKPYKCSECGKGFTTSSKLKDHEKIHTGEKPYECSYCSKTFARTDQHRAHVRTHSNEKPYGCSECGKCFSTTCVLKIHQRIHTGEKPYKCSECGKGFITSSKLKDHESIHNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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