Ncya023466.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neoitamus cyanurus
Gene Symbol
-
Assembly
GCA_947538895.1
Location
OX384541.1:17424678-17442007[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0001 0.015 16.5 0.2 3 23 162 182 161 182 0.97
2 14 5.9e-07 8.7e-05 23.6 1.2 1 23 188 210 188 210 0.99
3 14 3.5e-06 0.00051 21.2 2.6 1 23 216 238 216 238 0.98
4 14 6.5e-06 0.00095 20.3 2.0 1 23 248 270 248 270 0.99
5 14 4.3e-07 6.4e-05 24.0 2.5 1 23 276 298 276 298 0.99
6 14 3.6e-06 0.00054 21.1 0.2 1 23 305 327 305 327 0.99
7 14 1.5e-05 0.0023 19.1 1.1 1 23 333 355 333 355 0.97
8 14 7.9e-05 0.012 16.9 0.7 1 23 362 384 362 384 0.99
9 14 5.6e-07 8.2e-05 23.7 1.4 1 23 390 412 390 412 0.98
10 14 8.5e-05 0.012 16.8 0.6 1 23 419 441 419 441 0.99
11 14 8.1e-06 0.0012 20.0 2.5 1 23 447 469 447 469 0.98
12 14 0.00039 0.057 14.7 0.3 1 20 475 494 475 497 0.93
13 14 9.2e-06 0.0014 19.8 1.1 2 23 504 525 503 525 0.97
14 14 4e-06 0.00059 21.0 1.5 1 23 531 554 531 554 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAGATCAAATCTGAGCCAATGGCATTCTATTCGACATGTCCCCCACCTCCACAAATGGCCCAGCAGATACAAACACGACCGGATAGTGTTAATCCTCAACAGCAGCAGCAACACCATCAGCAGCAGCAACAACAACAACCGCAACAACAGCAGCAACAAGTTCAGCATCAGCAGCAGTCGGTAATTGCCATGATAGACAATAAAAGCAACGTAATACACCCACAAATATTGATTAACACTGGCACGGGTATGGCTGATTGGCGTACAAGACTAGGCGACACGGAAAACAGCGAAGAGGGCGAAATACTAAATCAATGCAATTCTCAAGCTCAGCAGTCTACTACGCCACTATCCACCGTATCGGATGGACCTAAGCCAGAAATCGCACAAAATAATGGGATGCAACCGATGACGATTACCGCACAAAATACAACATCCTCTACTGGGAATTCAAGGAGCAAGCCTCAAGCCTGTAAGGTTTGCGGGAAAATGCTTTCATCGGCAAGCAGCTATTACGTCCATATGAAACTACATTCGGGGACAAAGCCCTTCCAATGCACGGTATGTGATGCTGCTTTTTGTCGCAAGCCCTACCTTGAAGTCCATATGCGTACCCACACGGGAGAAAGGCCGTTCCAGTGTGACCTATGCTTAAAACGATTCAGCCAAAAGTCCTCCCTTAACACTCACAAAAGGATACACACAGGTTATTGGAGCATGCATAAACCATTCCAGTGCAGTCAGTGCAGTGCAGCGTTCTGCCGGAAACCCTATCTTGAGATTCACATGCGAACCCATACCGGTGAAAGGCCATTTCAATGTGATATCTGTTTGAAACGTTTCACGCAAAAATCCACACTGAACATTCATCGGCGCACACATTCGGTTCAAGATCGGCCGTTTCAATGTGAACAATGCCCCGCAACATTCGCCCGCAAGCCTTATTTGGATATTCATATGAGAACCCACACAGGTGAACGACCATTTGAATGTGACGTTTGCCTTAAAAGATTTACCCAAAAATCCTCGCTGAATATCCACAAAACAGTTCATACAGTAGGGATACGGCCGTTCCAATGTGCTCTCTGTCCGGCCGCATTCTGCAGGAAGCCATATCTGGACATTCATCAACGTACGCACACTGGAGAACGGCCTTTTGAATGTGAAATATGTTCGAAACGGTTTTCACAAAGATCTACGTTGAATATCCACAAAAGAATTCATACAGTTCAAGGACGGCCATTCCAGTGCGATCAGTGTCCTGCTGCTTTTTATCGGAAAACGTATCTCGACATCCATACACGGATGCACACTGGCGAGAAGCCTTTTCAATGTGAAATGTGCCTAAAACGTTTCACGCAAAAATCAACGCTAAATATTCATAAGCGGCTCCATACAGGTGAGAGACCGTATGCCTGTGATATCTGCAATAAAACATTCGCCGTCAAAAGTTATGTAACAGCACACAGATGGTCGCATGTTTCGGAGAAACCTTTAAGCTGTGATCGATGTTCTATGACGTTTACTAGTAAGTCACAATTTGCCGTGCACATACGAACACACTCGGCTGGACAAAATTTCGAGTGTAGCGTATGTGGTCGAACCTTTATTCGAGACAGCTATCTCATAAGGCATCATAATCGAGTGCACAGAGACAACCGAACAACAGCAAACAGCATAGCTACTATTAATAGTGTGGCTACTGGAGAAGTTGGTGGCCAAAACAATACCCCAGAACCAGGCGATGTTTATGAGTCGAACAACTCACAAGTATGCGATCTAAGGTATGTTTCGGACTTGCAAATAAATACCTCACCGGCAGTGTCTCAGATGTCTTCACCTGGAGTGTCGGATAGTCGAACTATGCTGAATGATAGGACGCAGACGATAACCATCAACAACCAGGACGGAAGTAGAAACACGATAAGCATTAGTGACGCCACTGCCATTAACTTAAATGAGCGATTAATGCAAGAAAGAGTAATCCAGGAGCGTAACAGAGCAATTCAAGATCAACGTGCAATTCAGGAGCGTGTTAATCAGGAGCGGGCGCTGCAAGAGAGAGCGCTTCAAGATCGCGCCATTCAAGAGCAACGGGCGCTACAAGAGAGGGCAATACAAGAGAGGGCATTACAAGAACGAATACTTCAAGAACGGGCTATACAGCAAGAGAGAGTGCTTCAAGAACGAGCCTTGCAGGAGCGAGTTATGCAAGAGCGAAATTTACACGCGCCAATTGTTATACAGCAAGGACATGTGTTAACGCACGACAACAGAATGGATAAAAACGTGATGGCTGGCACCATCGCAAGTCCTGGTCCAGTTTGA
Protein Sequence
MFEQQIKSEPMAFYSTCPPPPQMAQQIQTRPDSVNPQQQQQHHQQQQQQQPQQQQQQVQHQQQSVIAMIDNKSNVIHPQILINTGTGMADWRTRLGDTENSEEGEILNQCNSQAQQSTTPLSTVSDGPKPEIAQNNGMQPMTITAQNTTSSTGNSRSKPQACKVCGKMLSSASSYYVHMKLHSGTKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFSQKSSLNTHKRIHTGYWSMHKPFQCSQCSAAFCRKPYLEIHMRTHTGERPFQCDICLKRFTQKSTLNIHRRTHSVQDRPFQCEQCPATFARKPYLDIHMRTHTGERPFECDVCLKRFTQKSSLNIHKTVHTVGIRPFQCALCPAAFCRKPYLDIHQRTHTGERPFECEICSKRFSQRSTLNIHKRIHTVQGRPFQCDQCPAAFYRKTYLDIHTRMHTGEKPFQCEMCLKRFTQKSTLNIHKRLHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKSQFAVHIRTHSAGQNFECSVCGRTFIRDSYLIRHHNRVHRDNRTTANSIATINSVATGEVGGQNNTPEPGDVYESNNSQVCDLRYVSDLQINTSPAVSQMSSPGVSDSRTMLNDRTQTITINNQDGSRNTISISDATAINLNERLMQERVIQERNRAIQDQRAIQERVNQERALQERALQDRAIQEQRALQERAIQERALQERILQERAIQQERVLQERALQERVMQERNLHAPIVIQQGHVLTHDNRMDKNVMAGTIASPGPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00717963;
90% Identity
iTF_00717963;
80% Identity
-