Ncya000799.1
Basic Information
- Insect
- Neoitamus cyanurus
- Gene Symbol
- -
- Assembly
- GCA_947538895.1
- Location
- OX384547.1:8897806-8898786[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-10 4.2e-07 30.4 0.0 1 37 16 52 16 57 0.93 2 2 9.3 1e+04 -2.8 0.0 22 30 159 167 158 168 0.81
Sequence Information
- Coding Sequence
- atgccacgagtatacgtaaaaaaggggactagaacgagagaagtagatgaagaagcaatggagtctgcgatgaaggaagttacaaataaaactttatcaattagaaaagccGCACAAAAATACGGCGTTAAACCTACAACTCTTGAGAGTCGCTTAGCAAAGTTTTATAAAAAAGCTGCAGCTGAAAAAGAAGATAACATCCCAGCGCATATTTTTAGTTCGAAGTTCACGTCGAATCAAGTATTTACTAAGGAAGAAGAGACTCTTTTGAACAATTACATTACGGACTGCTCCAAAATGCATTACGGATTGACTATTGTACAAGTGCGGAAACTGGCATACGAATTCGCAAAAGCGAATCGACTGCATTATCCACCTAGTTGGAATCGCAACAAAATGGCAGGGAAAGAATGGCTGGACAGTTTTCGTAGGCGAAACGCAAATTTAAGCCTGAGAAAACCTGAAAATACCAGTGCAGCAAGATCTTATGGATTCAACAAGACGGCCGTAAATGGTTTCTTCGAGAACCTTGAAAAGGTTTTTTTAAAACATGAACTTACTGCAGATCGCATTTTTAATATTGATGAGTCAGGAATATCTACAGTGCTGAATACGCCAAAGGTACTGGCTGAGAAAAACCAAAAACAAATTGGTCAACTTGTTTCGGCAGAAAGAGGAGAACTTATAACATTTGGAGGAATTATTTCTGCTAGCGGTAACACAATCCCGCCTTTATTTATTTTTCCCAGGGTTAATTTTAAGGATCATTTTATGGAGGGTGCTCCGGAAGGCAGCCTAGGAGTCGCTACTAAGAGCGGTTGGATAAATTCCAGAATCTTTTTGGAGGTACTGAAACATATCCAAAAGACAACATCCTGCTCTAAGGATAATCCTATTCTGCTTTTGGTCGACAACCACGAAAGTATATATAGTCTGTGTACTTCCTCAATCCAAATCTGCTGTCACAGCAAGAACAGCTAA
- Protein Sequence
- MPRVYVKKGTRTREVDEEAMESAMKEVTNKTLSIRKAAQKYGVKPTTLESRLAKFYKKAAAEKEDNIPAHIFSSKFTSNQVFTKEEETLLNNYITDCSKMHYGLTIVQVRKLAYEFAKANRLHYPPSWNRNKMAGKEWLDSFRRRNANLSLRKPENTSAARSYGFNKTAVNGFFENLEKVFLKHELTADRIFNIDESGISTVLNTPKVLAEKNQKQIGQLVSAERGELITFGGIISASGNTIPPLFIFPRVNFKDHFMEGAPEGSLGVATKSGWINSRIFLEVLKHIQKTTSCSKDNPILLLVDNHESIYSLCTSSIQICCHSKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447071;
- 90% Identity
- -
- 80% Identity
- -