Ncya015332.1
Basic Information
- Insect
- Neoitamus cyanurus
- Gene Symbol
- -
- Assembly
- GCA_947538895.1
- Location
- OX384543.1:30542107-30549307[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-12 2.2e-09 37.7 0.0 5 39 1 35 1 39 0.90
Sequence Information
- Coding Sequence
- ATGGAAGCTGCATTAGCTGCAATTAGAAGTCGCGAAATGGGCTACCACAAAGCTGCTAAACATTTTGGTGTTCCACGTACAACACTATTTCGTTTATCGAAAAGGGACAATAATGTTCCCGATTGTAAATGGATTGGTCTGCATCCGCAAACCGAGGATATGTTAGTAAATCACTTACTACAAATGGAACAGGAACAATGCGGTCTGACAAGGGATGATGTTAAACGGATTATTTTCGAGTTTGCTGAACTAAATCGCATCCCAAACCCTTTCAAAAGTGACGACAGTTATGGAAGAGGTTGGCTTAAGCGATTTTTGAAGCGGCATGCTGATCGATTATCCTTGTGTAAGACAACAGACATTGTTGACGGCACAATTTTAAGAGTGCTTAGTGGTTTCATAAGACATCTTGTTGCTGTTACTACTTCTATCTACAATGCCGAAAAGAATTTGCTTGACTAA
- Protein Sequence
- MEAALAAIRSREMGYHKAAKHFGVPRTTLFRLSKRDNNVPDCKWIGLHPQTEDMLVNHLLQMEQEQCGLTRDDVKRIIFEFAELNRIPNPFKSDDSYGRGWLKRFLKRHADRLSLCKTTDIVDGTILRVLSGFIRHLVAVTTSIYNAEKNLLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00717665; iTF_01183745; iTF_00628162; iTF_01461064;
- 90% Identity
- -
- 80% Identity
- -