Ncya031090.1
Basic Information
- Insect
- Neoitamus cyanurus
- Gene Symbol
- -
- Assembly
- GCA_947538895.1
- Location
- OX384540.1:55375903-55380847[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-18 2.7e-15 56.6 0.0 2 45 366 410 365 410 0.96
Sequence Information
- Coding Sequence
- atgCCTGATGCAGCTGCTTCTCTAACAAAATCTGAAAGTAAATCCAGTTCAGAGCAAGCGGAAGCTCTTCAAGGTGGAGGAAGTGGCTCTGATTCTTTATGGGGAAGCACCGAATCACAGTTCCAGCACCATCATCATCATCACCAGCAACAGACACAGTCACATCATCAACAGAGAAGAACTCCATCACCTACAGTCGCAGGATCATCGCCCGCTACTAGAAGGAAACGCTTAAGAAAATCTTCAAATAGTGGTTCTGCAGAACGCACATCAGAAGAACAGAGTAGCATAGAAGGTTCTTCAAACATTAACCTATCTCAAATGAGTCAGATGTCCTTTGGGGCAACTGCATCCAACTTAGCGCAGACCATTCATACAAAAATTATCAAAGAGAGCTCAAGTACGGACACAGAAACTCATCCCCAAGATTCTTCACAAGAAAGTATTGAAGATTCTGGCACTCATCAGCATCATGTGCAGCAAATTAAACCTGAAGTAGATATATCTGGGGTCCAACAATCAATACCTCTTGATATATCTGGGCCAGGAACGCCTTCGGAACACGAAGGTCCCAGTGTGAGCTGTTCACAATCTCAATCATCTCATTCGGGTGTGCAATGGACGGTTGTCGACTCAAATTACTCACGCTTTTCGCTGCAATCATGCCAAGGCAATATCTCAATCGGTGATAATAATCAGACATCGGAAAGTGGCAATAGTACCACTAACGGACAGCAGCATGAACAGCAAAATGCCAGTACTTCAACAGGAAATCCGGCTGTCACATCGAATCAGCAGCAGCAGGGCCACATACAAATGCATTATCAAGGATCTTCTTATACTCCGCAAATCATATCTGTAAACAGTCTCGTAAGCAGTTATTCACAAAATTTATCTACCCCGACATCCCCAAATGAGTCTAGCATGGTGCAGTCGGTGTATAGTCAGGGCCCCACACCAACTCAATCTCCTGTGCACCAAATAGCGTCCACAACTGCCAATAATACCACAGCTCCTAACACCACAACGCAGTGCCAACAGACACAAGTAACACCAGCGCCGCAAAAGAGGAAGAGATCTGTGAATCCCCAAGGAGATGAGAATTTCCTTAGGGCTCTGGAAGCCGTTCGATCGGGAGGCATTGGATTTTGTAAAGCGGCTCGGTTGTACGGTGTAAATAATAGAACTCTCTGGTTAGAATACAAAAAGCGTGGCTACCCCATAAGTAGGCCCAGCATCAAAAGCCGTATCAAATTAGAACCAAATATATCTCCACCTCCTTCATCCACACCCACGAATGAGGAATCTACTATAGAAAACTACACTCATATAAACCAGCCAACCATCAACATGCAGGTTCCTCCAACTTCGGAAACACCTACCCCAATAATGTGCACTCCACACGCTCATCCCATGGGCGTTATGAGCTTTTTAGACACTAGGCATATGGAGTTCTCCACAGGGATTCACACGATGTCGCGGCAGCGCTACTCAGATGGTGCGGTCAATGTCAATCCCACCCCCATGAATTTGCAAGGTCTTAACTTCAATTCAATGTAG
- Protein Sequence
- MPDAAASLTKSESKSSSEQAEALQGGGSGSDSLWGSTESQFQHHHHHHQQQTQSHHQQRRTPSPTVAGSSPATRRKRLRKSSNSGSAERTSEEQSSIEGSSNINLSQMSQMSFGATASNLAQTIHTKIIKESSSTDTETHPQDSSQESIEDSGTHQHHVQQIKPEVDISGVQQSIPLDISGPGTPSEHEGPSVSCSQSQSSHSGVQWTVVDSNYSRFSLQSCQGNISIGDNNQTSESGNSTTNGQQHEQQNASTSTGNPAVTSNQQQQGHIQMHYQGSSYTPQIISVNSLVSSYSQNLSTPTSPNESSMVQSVYSQGPTPTQSPVHQIASTTANNTTAPNTTTQCQQTQVTPAPQKRKRSVNPQGDENFLRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKSRIKLEPNISPPPSSTPTNEESTIENYTHINQPTINMQVPPTSETPTPIMCTPHAHPMGVMSFLDTRHMEFSTGIHTMSRQRYSDGAVNVNPTPMNLQGLNFNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01431754;
- 90% Identity
- iTF_00628160;
- 80% Identity
- -