Basic Information

Insect: Neodiprion pinetum
Gene Symbol: ci
Assembly: GCA_021155775.2
Location: CM037740.1:7873477-7897987[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00066 0.099 14.0 0.3 3 23 822 845 820 845 0.94

2 5 0.093 14 7.2 0.1 1 23 853 880 853 880 0.85

3 5 0.00023 0.035 15.4 3.0 1 23 886 910 886 910 0.98

4 5 0.00036 0.055 14.8 0.4 1 23 916 941 916 941 0.97

5 5 1e-05 0.0015 19.7 0.5 1 23 947 972 947 972 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00066	0.099	14.0	0.3	3	23	822	845	820	845	0.94
2	5	0.093	14	7.2	0.1	1	23	853	880	853	880	0.85
3	5	0.00023	0.035	15.4	3.0	1	23	886	910	886	910	0.98
4	5	0.00036	0.055	14.8	0.4	1	23	916	941	916	941	0.97
5	5	1e-05	0.0015	19.7	0.5	1	23	947	972	947	972	0.97

Sequence Information

Coding Sequence: ATGATCCTGTCGAAATACGTCAAGTACGGATCGGCGAGCCTTTTGCCGCGAGCGAATTTGACGCCCGCCCGTCGCGACGCGTCGTTTGACCGAACAACTTTCCGGGAACGAAAAAGGGTTGAGGGTTTGCAGGATGAAACAATGCGACTCGAGGGGTCGAATTCCGAGGAGGAGGCGTGGATGCGGGACAAAGACGATCGGGGGTTAGCCGGTGACCGGCTAACGTACGACGACTCGACGAGAGCCGGGGGCTGGAAGCTGGATGAAatgagaataagaataagaagagaGGGAACGAAGGAACGAACGACCGAGTGTGAACTTACAAGCGCTTACCTATATAAAACGCGAGAGACCGTGAGGGTTCCAGCTCGTAGTTCGCTGCCGGTCACGAGGCGACATCCTCCTCTCTTATCCTTTCCCTCTGCACCGCCACGTTCCCTGCCTCCAACACGTGAAGAGGACTTACCGCTGGTCCGCCCCGCGCGACAAAGGAAAGAACGAACGAACGCGAGGGTGATAGGAGGCGAAGGAGGAGGTGGTGGACCAGTTTTCTCGGCTCTCGGTCGTCGCAGTGCCCAGATCGGGTCGCAAGTCGGTCGAGTGTGCGCGGTGGGCAAAGGATCGGAAGAGAAGGAGTCTGCGGTTGGCGCAGACGGAGCGATGAAGACATTAAAAGGGACGAGGATGGACGCGAAATTGGTTGTGAGATTACTTGGGGCGTCGGTCCGAGACCCTCTCACCGAGTGTTGGAGCATGGTCAAGAGTCGGCCGTCCATAAGAAGAATAATGCCGTTGCGGTGCGATTCGTATGCTTGGTACCCGGCTCGTTTGACTCCTGGCTTCTGGCCTCGAGACCGAAATGACGCCGCGGCTGTAGTAAgagagataaaagaaaaaacactcGCGCGAACTTGGCCGACCGGAATCATCGATATTATTGGAAGTGAAATCCGCCGATCAGAGTGTCGAGCTAAGGGTGCTGGAGTCCTCTGGTACCCAAGGGCCAAGGACTTCAACATGCCGGTGATGTTGATGATCGCCTGGAGAGGAGAGGAGCCGCGGTGGTCGTCAGACAAGCAGCTTGACTTCACATGGCGCGCCAGCATCCGCCTCCTCTCGATTAGTCGTCGCCGATATATTATCACGATTATACACAAAATCCTCCATACCTATATCGATTCCATATATCCGTACGCGGTTGAGGAAACTCTGATGTACACAAACGGGCCGACATGGCAGCCATGCGTCGCCCCAGGCCTGTGGATCCTCGGCGACGGTCGGCCCGCGGTAAAACGTCAGAAAAATTCATGCTATCGAGGGAGGAGGGTTGCTTCCGGTCCCCACGCGGCGCGattATCGAGTGGAGGAGCAACGACGATCGGTGGAACCGGTAGTCCAGTGGGAAACAGCGGTGGTAGCGGAGGTGAAGGTGGAGGCGGAGACGCCGGCGGCGGTGGGAACGCGAGTTCCGGTACCGACTTCCTCCGCAGAAGCCACCCCCTCTCGGAGCACACTCTCCACCCCGCGTATCGGCTCAACTACATGGACCACCTCTACCATCAGCTCCAGGCCTCCACGCACAGCCCCAACGCCTCATTACACGGGCTGGGTGGTTTAGGACCGGAGTACCTCCTGCACGCTGCCGGCCCCGCGAGCACCCTCGCCTCGTCAGAATTTCCCTTCTCTATCGATGCCTCTTCGAGACTAGGCAGTCCAAGAGCCtcagcatcagcatcagcgTCAGCGATCAGGGCGAGCAGAAAACGCGCCCTGAGCAGCTCACCGTACTCGGATAGATTCGACATCGACAGCATGATACGATTCAGCCCCAACAGCCTGGCATCCATCGTAAACGGCTCGAGAAGTAGCAGTGCAAGCGGAAGCTACGGCCATCTTTCCGCAGCCATGAGTCCGGCGCTTGGAATGCACCCGGGGATGGCACCGCATCTTCAACAACTTCAGACCCACCTTTTACGAAGTGCCGCCGTTGCAGCAGCCCTCCTCCCCCACGGCCACCACCCCTCGtcccaccttcaaccaccacCGCACCCCCCTCACCCCGCACACCATCCGGGCCATCATCACCACCCTCATTCTCACACCCACTCACATGCCGCCCTCGGTCCACCGCATGCCCAACTATTCTCCGTACCTCCGCACACAACTGGCATGGTAGCCGCAGTTGGAACCCACGGAAGCCTACCGCCTCCAAAGACTGAGCGAACGACGGACACGGCGTGCCGAAGGACTTCGGCGGAAGGACCGGGCCGATCGATAGCCGCCGAGGCTGACACCTCGTCCAGAAGAGCCTCGACCAAAGTAAAAAGGGAACCGGTCACGACCGCGGCGAGCACGACGACAGCCATGACGACGACAACGACCGCCCCGCCAACCCATCCCCAGGGACTCAGCCCAAGCGAGGACCTGAGGGACGAACCTGGGGACTTCATAGAGACCAACTGCCACTGGAGAGGATGCGGTCTCGAATTTCCAACGCAgGATGATCTCGTCAAGCACATAAACAACGACCACATCCATGCGAATAAAAAGAGTTTTGTATGTGGTTGGGAAGATTGTTCGAGAGAAGAGAAACCGTTCAAGGCGCAGTACATGTTGGTCGTTCATATGAGGCGGCATACGGGTGAAAAACCCCACAAATGTACCTTTGAAGGCTGCTTCAAAGCATATTCAAGGCTAGAAAACCTCAAGACGCATCTGAGATCTCACACGGGTGAAAAACCTTACACCTGCGAGTACCCGGGATGCAGCAAGGCCTTCAGCAACGCCAGCGACCGAGCCAAACACCAAAATCGAACGCATTCTAACGAGAAACCGTACGTTTGCAAAGCTCAAGGCTGTACGAAGAGGTATACAGATCCGTCGTCTCTTCGGAAGCATGTGAAAACTGTTCACGGTGCAGAATTCTACGCGAACAAGAAGCACAAGGGCGGCGACGGTGGCGGAAGTGACGAGGCTGGTGCAGGTGGACACAGTCCTAGTCGCAGCGAAGATCGACATCCAAAGACCCCGAGTTTGTCGAGTCCAAGTGTGAAATCAGAAAGCGAGGCGAACAGTCCGCCTGGTATGATGCAACAGGGAAGTCCACTGATCGGCGGATGCACGGATGATCTTGGAATGGGAGGCGGCAGCGGAGACGGCGTGACTGCGATTGGGGTGGACGAACCGTGGAACGAGGAACCGGATGACCTCGACATCGCCGATCTTCCGGTCGCGCTCCGTGCCATGGTCGGCGGAATGGAGTCTCAACAGGCACCCCCGCCCTCGAGGAGTCGTATAAAGGGCCGACTAAGCGCGAAAGCAATGCCACCATTATCGGTCGGGGTGACGGGCATGAGGTTAGGACGAGGAGCCGGGGGAATCGGAAGCGGCGGAGGTGTCGGCGGTGGTTGTATCGGCGGTGTTGGCGGAGGCGGAGTTGGAGCTGGAGGAATAGGCGGGGGTGGCGGTGGTGGTATTGGAGGCGGTGGAGGGCCTGGACCCCAGGGTAACATCGGAGAGCTTAACAGGCGGATAACGGACCTGAAAATGGAGAGTGGAGCGAGACAAACGACCTTCACCGACCTTCAACTAAGACTGCAACCCCTTAGCGAACCTAGACGCGACAGCAACAGTACGGTTAGTACCTACTACGGAAGCATGCGCTCGGCTGACTTTGGGAGCCGGAGAAGCAGCCAAGCAAGTGGCGTCAGTGCCGTGAGACTTGGTCTCGGCATGGGCTTGGGACTCGGTATCGGTTCGAATGGACCTGGAAGCGGGAGTGGAAACGGTGGTGGGGGTGGCAGCGGAATTGGGGGAGGTGGTAGTGGTGGAGCTGGTGGAAGCTTCTACGATCCAATAAGCCCGGGGAATTCTCGGAGAAGTAGTCAGCTTAGTACAACCTCCGGTCGACTCAACGGACCACCTCATCTTCAGGGCCAGTACTCGACAAACAATTTGGTCGACCAGACGCAGAACATGTCGCTTCAgGGACCACAAGGAATCCCGGGGGACTGGATGCCCCACGGGCACTGTCCACAGCCAGCTGGTGACCGAAGAATGTCGGAACCAGCTCGTACTCATCAAGGTCAAAGAACGTCTCCTCTCATGCCACCGAGACCAAGGTCAGCCCAGCTTCCGGAACTCCATCCAAACCAGGAAGTCATTCTCGACGAAGTCGGGGAGGGTGAAATGGTGGAAAACAAACTGGTCATACCAGACGAAATGATGCAGTACCTCAATCAGGTACAAGCAGGAGGCAACCAAGTAAGCTACAGAGGGAGTCCTCTACCGATCTGCCAATCGCCAATATGCACAAACCCGTCGCACTACCAACGCCAGCAGATCCCCTGCACTTACAACAGCCAACAGCACCAGTTGAATTGTTACAACCAAGGAAACGGTAGACAAAACTGTCCAAACTACCAAAATATGTCACCATCGTCGAACCTGCACCCGCAGTGCGGTAGTTCGAGAGCGAGTCAAGCTTCGTTAGGTGGTTACTGCCCGCCGCAGAACCAGTTGCAATCCCAGCCTCCACCGGGCTACGGTTCGCAATCGCAATGCGGTTCGCAAATAGCAAGTCCAGCCGGAGGTCAAGTAATGTCGCCGGGCTCTCACTACGCCCCTAGCCATGCGAGTGACCAACCAATGACTTCACCAGCCGCCGGAGCGCTCGCGCCTCAACACGTACCTCAAAACGTACAACAAAATTCGGCgcagatgacgaggcattgcAGTCTTCAGGGTCACCCAACGACACCCCAAGGATTTTACGCCGGTGGAAGTGGAGGAGGAATAACTGGAACCGGAACAGGTGCTTACGGATGTCGAAACGTCAACTGCGCGCAGTTGCATCGTCCCGACGAAACCTGTGCCATTCATCCCCAAACGCAATCCCTGCAGAGTCACGGTCAAATTTCACAGCAGTGTGCAGGTCAGCCTCGAAACGGATCGACGTCAAACTGCCCGCTACTATCGCCAGCCTCGAACCAATCGGCAACAACGGTTAAGAACAACACGAATAACAATCATTCCAACAATCGGTGCAGCCAAATAGCTCACCAAGGTCAAACAGGGCATCGACAAGGCGTTCAGCCAACCAACGAATCTCCGcaccaccatcaccatcatcatcatcttccGAATGTGGCTAATCCGACGGTACGAAACCCTGTGAACCAATGCCAACAAATGACTCCCGGGCACTGTCCTCAGGCCGGCATGGGAGGCCAAAAGGTACGCGGAGCTGTGGTAAGCCAACAAAATCAGCAAACACAACCTGGTGCTAATGTCTGCGGACAGATGACCGGTGGCGGTTGTAGTCAGCAGAGTGCTGCGACGGTTCAGGGCCAGACGAACCTCGGCTGTGGTCCGCAGTCGTGTTCGATGCACCACGGTTGTCAACCGCAGATGTCGCCAAGCCATTTCACTTGCGGTTGCCAATGGGGCTACACGACGGAAACGTGCTTTCACAGCCACGATGCGAACATGCCGGAAATTCAGTGCCGGGATATAAGCCAGTCCCAGCAGGGTTCGCCCGTAAAACCGCCCCAGGGGATGAGGCAGGACTCGTACAGACGAACCCTCGAGTATGTTGAGCAGTGCAGAAACTGGTCGGGTAATGCGCAGGCTCAGGTCCATGAGACGGGGGTTTCTAGCTCAACTCACCCCCTTTCTCTCCCCCAACCTCTGCCAGCGAGCGCTAATATGATCGTAAACGACATGACGTCGTCCCTGAGTTCTCTTCTAGAGGAGAATCGGTATCTTCAAATGATTCAATAA
Protein Sequence: MILSKYVKYGSASLLPRANLTPARRDASFDRTTFRERKRVEGLQDETMRLEGSNSEEEAWMRDKDDRGLAGDRLTYDDSTRAGGWKLDEMRIRIRREGTKERTTECELTSAYLYKTRETVRVPARSSLPVTRRHPPLLSFPSAPPRSLPPTREEDLPLVRPARQRKERTNARVIGGEGGGGGPVFSALGRRSAQIGSQVGRVCAVGKGSEEKESAVGADGAMKTLKGTRMDAKLVVRLLGASVRDPLTECWSMVKSRPSIRRIMPLRCDSYAWYPARLTPGFWPRDRNDAAAVVREIKEKTLARTWPTGIIDIIGSEIRRSECRAKGAGVLWYPRAKDFNMPVMLMIAWRGEEPRWSSDKQLDFTWRASIRLLSISRRRYIITIIHKILHTYIDSIYPYAVEETLMYTNGPTWQPCVAPGLWILGDGRPAVKRQKNSCYRGRRVASGPHAARLSSGGATTIGGTGSPVGNSGGSGGEGGGGDAGGGGNASSGTDFLRRSHPLSEHTLHPAYRLNYMDHLYHQLQASTHSPNASLHGLGGLGPEYLLHAAGPASTLASSEFPFSIDASSRLGSPRASASASASAIRASRKRALSSSPYSDRFDIDSMIRFSPNSLASIVNGSRSSSASGSYGHLSAAMSPALGMHPGMAPHLQQLQTHLLRSAAVAAALLPHGHHPSSHLQPPPHPPHPAHHPGHHHHPHSHTHSHAALGPPHAQLFSVPPHTTGMVAAVGTHGSLPPPKTERTTDTACRRTSAEGPGRSIAAEADTSSRRASTKVKREPVTTAASTTTAMTTTTTAPPTHPQGLSPSEDLRDEPGDFIETNCHWRGCGLEFPTQDDLVKHINNDHIHANKKSFVCGWEDCSREEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAQGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGGDGGGSDEAGAGGHSPSRSEDRHPKTPSLSSPSVKSESEANSPPGMMQQGSPLIGGCTDDLGMGGGSGDGVTAIGVDEPWNEEPDDLDIADLPVALRAMVGGMESQQAPPPSRSRIKGRLSAKAMPPLSVGVTGMRLGRGAGGIGSGGGVGGGCIGGVGGGGVGAGGIGGGGGGGIGGGGGPGPQGNIGELNRRITDLKMESGARQTTFTDLQLRLQPLSEPRRDSNSTVSTYYGSMRSADFGSRRSSQASGVSAVRLGLGMGLGLGIGSNGPGSGSGNGGGGGSGIGGGGSGGAGGSFYDPISPGNSRRSSQLSTTSGRLNGPPHLQGQYSTNNLVDQTQNMSLQGPQGIPGDWMPHGHCPQPAGDRRMSEPARTHQGQRTSPLMPPRPRSAQLPELHPNQEVILDEVGEGEMVENKLVIPDEMMQYLNQVQAGGNQVSYRGSPLPICQSPICTNPSHYQRQQIPCTYNSQQHQLNCYNQGNGRQNCPNYQNMSPSSNLHPQCGSSRASQASLGGYCPPQNQLQSQPPPGYGSQSQCGSQIASPAGGQVMSPGSHYAPSHASDQPMTSPAAGALAPQHVPQNVQQNSAQMTRHCSLQGHPTTPQGFYAGGSGGGITGTGTGAYGCRNVNCAQLHRPDETCAIHPQTQSLQSHGQISQQCAGQPRNGSTSNCPLLSPASNQSATTVKNNTNNNHSNNRCSQIAHQGQTGHRQGVQPTNESPHHHHHHHHLPNVANPTVRNPVNQCQQMTPGHCPQAGMGGQKVRGAVVSQQNQQTQPGANVCGQMTGGGCSQQSAATVQGQTNLGCGPQSCSMHHGCQPQMSPSHFTCGCQWGYTTETCFHSHDANMPEIQCRDISQSQQGSPVKPPQGMRQDSYRRTLEYVEQCRNWSGNAQAQVHETGVSSSTHPLSLPQPLPASANMIVNDMTSSLSSLLEENRYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -