Basic Information

Insect: Neodiprion pinetum
Gene Symbol: -
Assembly: GCA_021155775.2
Location: CM037745.1:4888948-4892965[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.03 4.5 8.8 2.5 1 23 779 801 779 801 0.96

2 7 0.0018 0.27 12.7 2.7 1 23 844 866 844 866 0.98

3 7 0.00024 0.037 15.4 1.1 1 23 922 944 922 944 0.98

4 7 0.019 2.9 9.4 0.0 1 23 960 982 960 982 0.98

5 7 0.00065 0.099 14.0 0.3 1 23 1009 1031 1009 1031 0.99

6 7 0.00056 0.085 14.2 0.0 1 23 1054 1076 1054 1076 0.94

7 7 0.018 2.8 9.5 0.3 1 23 1081 1103 1081 1103 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.03	4.5	8.8	2.5	1	23	779	801	779	801	0.96
2	7	0.0018	0.27	12.7	2.7	1	23	844	866	844	866	0.98
3	7	0.00024	0.037	15.4	1.1	1	23	922	944	922	944	0.98
4	7	0.019	2.9	9.4	0.0	1	23	960	982	960	982	0.98
5	7	0.00065	0.099	14.0	0.3	1	23	1009	1031	1009	1031	0.99
6	7	0.00056	0.085	14.2	0.0	1	23	1054	1076	1054	1076	0.94
7	7	0.018	2.8	9.5	0.3	1	23	1081	1103	1081	1103	0.96

Sequence Information

Coding Sequence: ATGTCAAATAAACGAAAGATATTTGACGTGGACACCAAGTGTCGTCTCTGCCTCGGAGACGAAGGTTACATGAGTTACCTTTTCGAAGATACACTGCTTCCAAAAGTTGAGAACATAACCAAGTGCACCTCGATCATTATACGGGAAGATGATGACCTACCTAACAAAGTCTGTCACCTCTGTTTATATAAGTTGGATATGTGGAACGAATTCAAGGAACAATTCATCAAGTCGAATGAAGTGCTGCTCGCCCATTTGGATGCTAGTGAGATCAATGATTCCACCCTGGAATCTAACAATTCTAAGAGAAGATATGGTTTACAAGCAAGTGAAACGGAAACTTTGTCTGAAAATCCTGGCACGAAAAAAGTTAAGAAGATCAATATTCCAGTGGCACCTCTAGAGTTCACAAGAGTGGAATATGTTACTGATCAATCTGAATTAAGGGATATGTTTATACCAGAGGATGATCCAATAACTTCTAGCTTCAAAGAAGAAGATACAACGATGCTAGATCAAAAATCATCAACGCCCGACCATGATAAAagcgagaaaaataatcaagtaGAATCCAAATCTCAGGAATTGGCACTCCATCCAAAGCCTACATTGGTTCCTATGAGAATTAAACATTTTGGAGGGAGACGTGGTAGGACTACTGCAAAGCGAAGAGCATCAACCAAACGATGGGTGGCGAGGAAAAAAGCTCTTCTGGCTGCTACGGGTAAATATGCTTCGGATACTGATTCTATTATATCAGATAATGACTCGAAATTATCACCAGTTCAAAAAGCTCGCGCAAAGACAAACGCGGATAAAGAAGTTGTGAAACAAAGGAGATTAGCTaaagctttgaaaaatttagaaacAGATATGAAAGGTGAATACGGCATTAAATACGATAGCGATGCAATTTTAATTCCTCAAACAGATTCCGGAGTGAACAAACACAAAACAAGGtatcaaaagaaaataacgctTGAGAAAGGTTCGACGAGTGACGCAAGGAATGTACAAAACTCTgcaagaaacgaaaatagtACTGAAAcaaataatgagaaagaagaagCTGCGAATGAAAAAGAGAACAGCTGCACTTTAAACGAATCAAGATTGAAGGAACACGTTCTGCACTCACAATCTAAAACAATGGAAGGAAGCAATGATAGTCTAACCAACATTTTATCTATCTTTAACCCACAACCAATTAAATCCGAGATTGAAGTTGGAAATGCTACTTACATTGTAACGTCAACACTGGTCCTCTCGGAACATCATTATATAAAATCTGATTCGAAAAACTCTTCTCTGGATGGTAACGGCACAAACATGGACGAAAACAGTCAGGAGCGTAACACAGATATCATCGATGCTGTACAACTCCGAAGAATAAACCCAAAATCAATAATTGATAATGACGACAAAAGAAATGTTGAAAGgtgtttgaatattgaagTTGAGGGTACAGAATTAGAAGCCTTGCAAAAGGTTCAGGCTGAGTTAGctgcgtttgttgaaaaagatATGAAGGACAGGCTATCGCACAAGGATGTACTACCGTGCACTGACGAAGTGAATAGCAAGCCAAAAGACTCTTTCCAAACATTGGATCAGCAGCTGAAAGCAATTGTAGAAAAAGCAATTAGAAAGAATATCGAGACAtctttaaaattgaaaaaaacccCCTTAAGCAAGGTAACAACACTTCATAATCAAAAATCATCAACCTTTTCACCAGCATTTATCAAAGCAGCAACAcgttcaaaaatattccaacCTAAAGTCTTGCTTATGAGATTGGATATAAACAAAGTAGGGAagaggtataaaataaataatttcccATCCATGGAAAGTCAAAAATCTAACAACTCATATATTGAAGATGGAAATGCAACTTACAACGACAGACAGAATGACTCTCCACTACAATATCGAACGTTCAAGCTAATGCCTGTTGAATCTGATGATACTGTGAATTCAGACGATCGAACTGTAACTTCCACTccaaaagaaattcaaaataatttgaattcgaTCTCTGAGTCTCCAAAAACAAGCGAGCCccaaagaagaaaattatgtGGTCCTAGAGGTCGTAAGAATTTCGCCATATCTGATGAAGTTCTAAACGCATTGCGCAAGAGACATGTTGATGACTTGTCTAATGTTAAACAAGTTAAGAAGGCAATTTGTGAAACTGTCGAATGTGATACAACAACCAGAAGTTTACCATTGCAGCCTGTAACTGATAAATTGGGAACAAAGAGAGTGAAGTTTTCcacagattttgaaaatcaatgcAATATCGAGGAggaactgaatcaatctaaatatTCATGCGATACCTGTAAACAAAGTTTTGCTACCTTAcacgaaaaagaagaacataCCACATCTCATAAGACAGTTTCATGTATTGACGCTGTTCCAAAACCTAAGAAACGACGTATGATGCGCTGTAAGCGATGTCACGAGGTAGTTGACGCAAGATTAGTTAGAATCCACACTTGCCGAACAGCGAAATTTCACAAATGCTACGTTTGTAACTCAACTTTCAGAACAGAAAAGTTGTTGGTCACCCACCTGGAGACTCACGACGAATCAGAATTTAATATTGACAACATTGAGTCTGGCGAAAGTAGTAAAAACGTAGTCAATGTTACTAGTACCCAAGGAACGGTAGCTCAACGTGCAGCTGATTCGAATACCATAAGTATAGAGcaatgtgaaaaagaaaagccTGCGACAGTCAAAGAGATATACACATGTTTTGTTTGTGATAAAAAGTTCACAGACCAAGAAATACTAAAAGACCATCTGCAGCAGCATTGTAATGATGAAAGCGAAGAAGATAATGGTTCTGGGAAAGAAGAATATCAATGTGCAATCTGTGGCGATTCGCTGGATAATGAAGATGCCCTGGAAACTCATGTGGAAAAACATCTCTGCGATGACCAAGACGACAATCCGAATCTAATAAATATAACCAGCGAAAGTGATAATAAAAAGTTGGAGGTAATGTTTAAGTGCGAGCAATGTACAAACGGATTTACATCCGAAGTATTGTTAGCCCTCCATATGCAGTCTCACGAAGAAGAGCTCGCTATAGCGAAGTGGGAAAAAGAATCGGCAGGACGGTCGATAATACGCGAAGAATTTCTCTGCGCTATATGTGATGAGACATTTAAAACTGAAGCAGAACTTTCGGAACATGTTGACATGCATAATGGTAACGCTCACGTTTGCTTCTTGTGTGAGAAACCGTTCCTCACTCTTGAAGACCTTCAGGCACACGTTGAAAGTCATTGA
Protein Sequence: MSNKRKIFDVDTKCRLCLGDEGYMSYLFEDTLLPKVENITKCTSIIIREDDDLPNKVCHLCLYKLDMWNEFKEQFIKSNEVLLAHLDASEINDSTLESNNSKRRYGLQASETETLSENPGTKKVKKINIPVAPLEFTRVEYVTDQSELRDMFIPEDDPITSSFKEEDTTMLDQKSSTPDHDKSEKNNQVESKSQELALHPKPTLVPMRIKHFGGRRGRTTAKRRASTKRWVARKKALLAATGKYASDTDSIISDNDSKLSPVQKARAKTNADKEVVKQRRLAKALKNLETDMKGEYGIKYDSDAILIPQTDSGVNKHKTRYQKKITLEKGSTSDARNVQNSARNENSTETNNEKEEAANEKENSCTLNESRLKEHVLHSQSKTMEGSNDSLTNILSIFNPQPIKSEIEVGNATYIVTSTLVLSEHHYIKSDSKNSSLDGNGTNMDENSQERNTDIIDAVQLRRINPKSIIDNDDKRNVERCLNIEVEGTELEALQKVQAELAAFVEKDMKDRLSHKDVLPCTDEVNSKPKDSFQTLDQQLKAIVEKAIRKNIETSLKLKKTPLSKVTTLHNQKSSTFSPAFIKAATRSKIFQPKVLLMRLDINKVGKRYKINNFPSMESQKSNNSYIEDGNATYNDRQNDSPLQYRTFKLMPVESDDTVNSDDRTVTSTPKEIQNNLNSISESPKTSEPQRRKLCGPRGRKNFAISDEVLNALRKRHVDDLSNVKQVKKAICETVECDTTTRSLPLQPVTDKLGTKRVKFSTDFENQCNIEEELNQSKYSCDTCKQSFATLHEKEEHTTSHKTVSCIDAVPKPKKRRMMRCKRCHEVVDARLVRIHTCRTAKFHKCYVCNSTFRTEKLLVTHLETHDESEFNIDNIESGESSKNVVNVTSTQGTVAQRAADSNTISIEQCEKEKPATVKEIYTCFVCDKKFTDQEILKDHLQQHCNDESEEDNGSGKEEYQCAICGDSLDNEDALETHVEKHLCDDQDDNPNLINITSESDNKKLEVMFKCEQCTNGFTSEVLLALHMQSHEEELAIAKWEKESAGRSIIREEFLCAICDETFKTEAELSEHVDMHNGNAHVCFLCEKPFLTLEDLQAHVESH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01048488;
90% Identity: iTF_01048488;
80% Identity: -