Npin004658.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- -
- Assembly
- GCA_021155775.2
- Location
- CM037740.1:40435871-40439155[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0046 0.69 11.4 0.6 2 23 460 483 459 483 0.95 2 10 0.01 1.5 10.3 1.4 1 23 489 513 489 513 0.98 3 10 0.00017 0.026 15.8 0.6 1 23 519 543 519 543 0.96 4 10 0.003 0.45 11.9 0.6 3 23 551 573 550 573 0.91 5 10 0.00025 0.038 15.3 2.6 1 21 580 602 580 604 0.95 6 10 0.0011 0.17 13.3 0.5 2 23 612 635 611 635 0.95 7 10 3.5e-06 0.00053 21.2 1.4 1 23 641 665 641 665 0.97 8 10 0.00011 0.016 16.5 1.1 1 23 671 695 671 695 0.94 9 10 3.4e-05 0.0052 18.0 2.5 1 23 701 723 701 723 0.99 10 10 0.001 0.15 13.4 0.2 1 23 818 843 818 843 0.95
Sequence Information
- Coding Sequence
- ATGTCTCGTAAAGGAGTCGCACTCGGTGGCAGTAAGTCGAAGAAGATACCACGGATATTTCAACATCGTCGAAGCACGAGTCCAACGCGATTTCCAGGCTCCTCAACCAACGTCGTCGCCGTCGAACAAGTATCCGATGACGTACACACTGTCGAATATGAGTCTGCCCCATCCGAATACCAGAAAAAAGCAaccaaaaagaaaacaaagctCGCCAAGGCAAGCAGCATGGACAAGTCTAGTGTCGGCGTCGCCAAACCGTCGACCACCAACAACAACTTCTATGCAGAATGTCACGCTGAGGATGCAGAGACTGTAGCTAGTATTGAAAAATGGCTAAAAACTCGAACCGAGTCAATATCCAGCATGGACTTAGACGTGATAAAGTCAGAAGTTGAGGAAGCATCCGGCAACGATCATCGTTATCTCACTGATGAGATGTCGCACGCTTTCCTAGATAAAGATCAGGATGTTCTTTCGATGGACATAGATTTGTCCGACAAGAAATTGGTCCTGGGCTATGATCCTGTGTTGCAGGACCTGCGCAGTGATAAGCTTCTTGAAACATGCGAAAAGGATGAGTTTATCCTGCCTGCCTTTCAACTTGACCATCTAGAGCCCCTCACTCTAACTCCTGACGACATGATGGTAGCAGGGGAGATTTTACCCTCTGCCAATAGTCAACCTGTGTTGAGCAACCCTGGAATCTGTCTTAGTACAACAACCATGTCAACCCAAGAATTAATCTACGGTAAAAGTCAATGTGATAAAGACTCACATCAAAAGAATCGGGGGAAAAGTACGAGTTGTTCAGATGCCGAGACAAGTTCATTGAAACAAGTTGTAAATGTCTATCTTGAGGGGCTGGGACATGTGAGTGTCGAGACGAGTTCTGTAGAAACATTAGGAAACACTTTGAGCAAGGCAGACGAGTGCagcgaaatgaaaatgaaattaaaaccGAAACTGAAGCCCAGGATCATAAAAAAGCGGAGTAAACCTTCCCTTAAGAGTGACAACAATTCATCATTCAGGGTTTTGAGAACAGAGGAACAGCCCAGAACAAGTGAAGGCATAATGGCTGTGGTAGCAATATCAACAGACAAGATATCAAACATGACGCAGATAGTAATCAACACTGGCAAAGAGGAACAAATATATCAAGGCAAAACTTCTGAGCTGATTGAGGCCACGGGCAGTTTTCCACAGTTGTCCAGGATACAGAATTCGTGCCAGGAAAATCATGTCTCTGATCTCATCTCCGACGGATCTAATACCAATGAAAACGATCTTGTGATATCCAATGCCTTGGAGGAACTCGGCATCACTGATGATACCCTTGAGTCCATTTCGTCAACTGAGCATGGAAAGATGTGGGTCTGCCCTAAAGAAGATTGCAGAAGACACTTCAACAGACTTTATGCCCTAAAAGGCCATGTCTTGTCTCACTACGGGGTCAGGCCATTTAAGTGCGACTTCAAAGGATGCGCATGGGCATTTTATTCAGAGTTCAAGTTGAAGCGGCACAAGGAAACACACCTGAAGCGTAAGGACTATATTTGCGAGGTGGACAATTGCGGAAGGAGGTTCACAACTGTTTACAACTTACTGACACACAAAAAGCTACATAATCGGCCTAGCAAGGTATTTTGTCAGGTTCCAAATTGTCAGGAAAGGTTCCAAACCAAACGAGCATTGGAGCTTCATATGAAGTCCCACGACCAGAGCCATGCGCCATACGTTTGCAAGCAAGAAGGCTGTGGAAAAAGATTTTACACAAGCAACGCACTCACCAGCCATCAGCGATGTCACAGTTATAAAGAAATTGACATAAAATGCTCGTGGCCTGGCTGTGGCAAACTTTTCGACAAGCCATGCAGACTGAAAGCACACATTAGATCACATACTGGGTATAAGCCATATCCGTGTACCTTCCAAGGCTGCAACTGGGCCTTTTCATCGTCGAGTAAACTTAAGCGGCATCAAAAAAAGCACACCAACGAGAGGAAATTTATATGCGACGTTTCATCATGCGGAAAGGCATTCATGAGATCTGAACATCTTAAGGAACACAGACTAACCCATAAAGATGGCAGATGCTTTCAGTGCCATATGTGTGACGCTAAATTCTCAGCTAAAAGCAGTCTCTATGTTCACATCAAGAAGCACCAGACCCAGGACGTCGTTTCATCTTTGCAAAATACAATGCTTATTGATCAGCAAGTATATGCGGTGGAAAACGAGGCTAATGAAACGAGTTTGAACGAACGTTATATAACGAATATCGAAAGTTCTGATATTATTGAGACACAGGAACACTCACATAGCCTCGACCTTGATCTGGATCTTGATCCCATCATCGTCGACACTCCCCTGACAGGCGCAGGTCAGTGTGCATCGAGGAATAATGGAGTCGCAAGTAATGACGGGAGCCATCAGGACAGAATAGGTTACTTCTGCTCGATGGAAACCTGCTCGAAGGCATATGCGGCAAAATCAGCACTCAGAGCACATATGAACAGGATTCATGGAATAAAGAATGGAGAACAGAAAGTTTTGCAAATCCCCGATGAAGAGGAATGTGCGGCAGCAACATCCAGTGTAGATTATGTGACATACGCTACTTCGCAGTCAATATCTAACGATCATATGATAATGATTCCTCCCCACGAAGCCTTGGTGGTTAGCTCGCCGGAGCTGGAATCTCCTACGTTTAATTCTATGCTGAAATTATCTGAATCTAATTGTCAAGACTCGGCACAGTCTATTGAAGAACCAGCAGATGAGCAACATGACATGATCGATGAGAATCACGAAGGGTCGGCAAGAACCGATTTGACCTACAGCGACTTTATCAGATTTAAAGCTAACAGCACGATTTTTAACTCCGTCGTTGGTGCTACCGACGTCGTTCTTGGGGCCGGTGGACTTGTGGAGGGTCTGCTTCTTCCTGATGACTTGCCCTCTGTCTATTACCAAGACGACATTGCGGGTACCGAGTGTCAGGTGTTGCTGCTGGATTCAGGACCTCCTGAGAGCACCATAAATCTTCGCGATCTCGAATGA
- Protein Sequence
- MSRKGVALGGSKSKKIPRIFQHRRSTSPTRFPGSSTNVVAVEQVSDDVHTVEYESAPSEYQKKATKKKTKLAKASSMDKSSVGVAKPSTTNNNFYAECHAEDAETVASIEKWLKTRTESISSMDLDVIKSEVEEASGNDHRYLTDEMSHAFLDKDQDVLSMDIDLSDKKLVLGYDPVLQDLRSDKLLETCEKDEFILPAFQLDHLEPLTLTPDDMMVAGEILPSANSQPVLSNPGICLSTTTMSTQELIYGKSQCDKDSHQKNRGKSTSCSDAETSSLKQVVNVYLEGLGHVSVETSSVETLGNTLSKADECSEMKMKLKPKLKPRIIKKRSKPSLKSDNNSSFRVLRTEEQPRTSEGIMAVVAISTDKISNMTQIVINTGKEEQIYQGKTSELIEATGSFPQLSRIQNSCQENHVSDLISDGSNTNENDLVISNALEELGITDDTLESISSTEHGKMWVCPKEDCRRHFNRLYALKGHVLSHYGVRPFKCDFKGCAWAFYSEFKLKRHKETHLKRKDYICEVDNCGRRFTTVYNLLTHKKLHNRPSKVFCQVPNCQERFQTKRALELHMKSHDQSHAPYVCKQEGCGKRFYTSNALTSHQRCHSYKEIDIKCSWPGCGKLFDKPCRLKAHIRSHTGYKPYPCTFQGCNWAFSSSSKLKRHQKKHTNERKFICDVSSCGKAFMRSEHLKEHRLTHKDGRCFQCHMCDAKFSAKSSLYVHIKKHQTQDVVSSLQNTMLIDQQVYAVENEANETSLNERYITNIESSDIIETQEHSHSLDLDLDLDPIIVDTPLTGAGQCASRNNGVASNDGSHQDRIGYFCSMETCSKAYAAKSALRAHMNRIHGIKNGEQKVLQIPDEEECAAATSSVDYVTYATSQSISNDHMIMIPPHEALVVSSPELESPTFNSMLKLSESNCQDSAQSIEEPADEQHDMIDENHEGSARTDLTYSDFIRFKANSTIFNSVVGATDVVLGAGGLVEGLLLPDDLPSVYYQDDIAGTECQVLLLDSGPPESTINLRDLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01048430;
- 90% Identity
- iTF_01048430;
- 80% Identity
- -