Npin000856.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- -
- Assembly
- GCA_021155775.2
- Location
- CM037740.1:7927669-7931371[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.004 0.6 11.5 0.8 3 21 269 287 269 288 0.91 2 13 0.032 4.9 8.7 1.1 1 23 294 316 294 317 0.92 3 13 0.0033 0.5 11.8 0.9 2 23 330 352 330 352 0.96 4 13 0.039 5.9 8.4 1.9 3 23 366 386 366 386 0.97 5 13 1.3e-07 1.9e-05 25.7 1.4 2 23 415 436 414 436 0.97 6 13 0.0065 0.97 10.9 0.4 1 23 441 464 441 464 0.91 7 13 2.1 3.2e+02 3.0 1.6 2 23 535 556 535 556 0.96 8 13 2.5e-05 0.0038 18.5 1.6 1 23 565 587 565 587 0.97 9 13 0.00028 0.042 15.2 0.6 1 23 596 618 596 618 0.97 10 13 0.016 2.5 9.6 2.2 1 21 624 644 624 645 0.95 11 13 0.00014 0.021 16.2 2.0 1 23 675 697 675 697 0.98 12 13 0.16 25 6.5 0.0 1 23 768 791 768 791 0.97 13 13 3.5e-05 0.0052 18.0 4.8 1 23 796 819 796 819 0.97
Sequence Information
- Coding Sequence
- ATGATGACTACTGCGGTACAAGACTGGAATAATGCCTGTAGACTTTGTTCGGAGGAGCAACCGGAAATGTTGTCGATATTTGGTGACGAAGGTGTGCAAAGAAAAGTCACCCAAAAGATGAGAGCCTGCTTTCCCATAATGGTATACAAAAGTGATCCGTTACCAAAACAGATATGCCAATTTTGTGCAGCCAGATTAGACGACGCTTACGAATTCAGAGAACGTTGTCTCGGCGTCTACAAGTCTATGCATATACAACTTCTAGCCTTAAAGGATTCTGaaactgtaaaaatatttttggatgCCATGAAGAATTCTCCTGATCCTTGCCAGGCCCAGCTTTGCAAAGAAAAAGCACGCGCTCCGCCACCGTTGGTTCCTTTATCTGCTTCACTATCAGTTGAGAAGTCGTCTGTTTCCATTGGCATGCAAAAGACAGATCAGTCCAATGCAGCCAATGAAGCTTTGGTAGAACTTCCTTGCGAAGTGCAGATTAAAGAGGAGCCCTTAGATAACTCTGACGGGAACGGGCCGATCTTAGGTACCGCGATTATGACGGCGGAAGAATTGTTGACTTCGGTTTGTAATGATCGAATGGAAGTTTCTCACGAAGAGGATTACAGCTCAAGGGGTACAAACGGAGcggaaaacagaaaaacattCGGTAATGAATCGAATGTTGGAATTACTAGTAGGCCAGGGAATGGAAGCACTAGCATTCTAGAACAAGTATTAACTGGAAGCTTGACGATAAACGACCGAATAGGGACGAAACCAAAATTTAAACCAAGTTCTAAATGGTGGTGTTCGCCGTGCAACAGATACTACAGAACAAAAGAGAGTTTACGTAAGCACATGCGGCTCTTCTGTCCGCGTAGATATAGGTGCAAAAAATGTTCGAGCGTGTTTCAATCTGTGGAAGAACTTGCAAAACATGAAGGTTTGCATCATCTCAAAGTTACTCTGAACTTTGATGAATGTGTCAATGAGTGCGATCAGTGCGATCGCGAATTTGTTAGCTGGGAAATACTCAGGCATCACAGACAACGAGATCATCAGTTAGTTCCTGAATTGGCGACTGCATCAAACACTTGGTGTTCTCTCTGCAATCGtttttttccaacaatgaATTCATACCAAAATCATAAGCAACTGCATCAGCCAGAAACGGCAAATGTGACGCCTGTACGTGGAGAAACATTATTCAAACACAATCCTTTTGCAGAAAATATCAAGTCACTCATGTGTCCTACTTGTGGAAAGGTGTGTACGCAGCAGAGTGCATTATCAAACCATATGCGAACTCACGAACCAAAAAAACACAAATGTGAAATTTGTGGCCGCTCATTTGGACTGTTTATTCGATTAGCGGCACACAGGCTAAGCGAGCATAATCAGCAGCCTGTTATGTCTCCTGTTAATGCTAGTGTTGAACAAGAGGAAGCATTGAATGAGGAGAGAGAAGCGCGTGAAGCCAGTGAAGCGATAACTGGTATAAGCAATAGAAGCTACATTAAGGAGTCTGACGAAGAAGATGTGTCTATGGATGGTTCGGCTCATGCAAGTAAAGACATCAACATGAGCACATCAAAGAACGTGGCCCGTTGCGGTATTTGTTTGCAGTGGTTTAACGATCACACGACAATGCTGACTCATTTGCAAACACATTCCGAGAGCTATGTATATAAGAGCTTCAGCTGtaaagtttgtaaaaaaacgtTCAAAGAGAAATGGCAGCTTCTTCGCCATGAGATCTCTCACAAACGAGCAGCAAGCACAGCTAAATACGCGTGTTccacgtgtaaaaaaattttcaaagacaaGGCGCAACAAAAGGCACATGAAGCAACACATGTTGTTGATAAAACTTACCATTGTCCACGATGTAACAAGATATTCTTCAAAGAGATTTCCCTGCTCGCACATCAGTGTAGTGGAGGGAAACCTGTATTCGGAAAGCGTGGTGGTGCGACAAAGGCTTCATCCAAGTCATCACAGCAACCATTCAACACACACAAGAAGTATAACTGTTCAAAATGCAATGCAACTTTCAACAATTCTCAGTCAAGAAATTCTCACATGAGAGTACACACCCAGGCACATGCAATGCTCCAGgtacgaaaaaaagaattgaaaaaggaATTGGAAATGTCAAAAGCTATGCCAAACCTTACGCCGGAACATATGTCACCAGGTACTTCAGTTCCAATGCAGATTGAGcctaaaattgaattgaaaattgaggaTTCACCAAATGCTCCTCCTGCTCTCAAACGTACACTAATAAGGACTGCTGGAGGGTATCGTTGCGGTGTATGTCAGTCACCATTTGTCTTGCGAGAACTCGCAGTGGCACATTTGAGATCAGCCCATCCTGCTGCAACATTTCAATGTCGTCATTGCAAGAAGCAGTTTTCTACGCGATATACTTTGTCCCGTCATGTTGAGACGGTCCATCCAGATGAATCAGAAAAATAA
- Protein Sequence
- MMTTAVQDWNNACRLCSEEQPEMLSIFGDEGVQRKVTQKMRACFPIMVYKSDPLPKQICQFCAARLDDAYEFRERCLGVYKSMHIQLLALKDSETVKIFLDAMKNSPDPCQAQLCKEKARAPPPLVPLSASLSVEKSSVSIGMQKTDQSNAANEALVELPCEVQIKEEPLDNSDGNGPILGTAIMTAEELLTSVCNDRMEVSHEEDYSSRGTNGAENRKTFGNESNVGITSRPGNGSTSILEQVLTGSLTINDRIGTKPKFKPSSKWWCSPCNRYYRTKESLRKHMRLFCPRRYRCKKCSSVFQSVEELAKHEGLHHLKVTLNFDECVNECDQCDREFVSWEILRHHRQRDHQLVPELATASNTWCSLCNRFFPTMNSYQNHKQLHQPETANVTPVRGETLFKHNPFAENIKSLMCPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRSFGLFIRLAAHRLSEHNQQPVMSPVNASVEQEEALNEEREAREASEAITGISNRSYIKESDEEDVSMDGSAHASKDINMSTSKNVARCGICLQWFNDHTTMLTHLQTHSESYVYKSFSCKVCKKTFKEKWQLLRHEISHKRAASTAKYACSTCKKIFKDKAQQKAHEATHVVDKTYHCPRCNKIFFKEISLLAHQCSGGKPVFGKRGGATKASSKSSQQPFNTHKKYNCSKCNATFNNSQSRNSHMRVHTQAHAMLQVRKKELKKELEMSKAMPNLTPEHMSPGTSVPMQIEPKIELKIEDSPNAPPALKRTLIRTAGGYRCGVCQSPFVLRELAVAHLRSAHPAATFQCRHCKKQFSTRYTLSRHVETVHPDESEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01048423;
- 90% Identity
- iTF_01048423;
- 80% Identity
- -