Basic Information

Insect: Neodiprion pinetum
Gene Symbol: -
Assembly: GCA_021155775.2
Location: CM037744.1:25600665-25601741[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00029 0.044 15.1 3.0 1 23 81 104 81 104 0.97

2 9 1.2e-05 0.0019 19.4 3.6 1 23 110 132 110 132 0.98

3 9 0.00041 0.062 14.6 4.4 1 23 141 164 141 164 0.96

4 9 0.00077 0.12 13.8 1.8 1 23 170 192 170 192 0.92

5 9 9.6e-06 0.0014 19.8 2.3 1 23 197 220 197 220 0.96

6 9 0.0003 0.045 15.1 0.6 1 23 226 248 226 248 0.98

7 9 1.9e-06 0.00029 22.0 1.5 1 23 252 274 252 274 0.99

8 9 0.00025 0.038 15.3 5.0 1 23 280 302 280 302 0.98

9 9 2.7e-05 0.004 18.4 2.3 1 23 308 330 308 330 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00029	0.044	15.1	3.0	1	23	81	104	81	104	0.97
2	9	1.2e-05	0.0019	19.4	3.6	1	23	110	132	110	132	0.98
3	9	0.00041	0.062	14.6	4.4	1	23	141	164	141	164	0.96
4	9	0.00077	0.12	13.8	1.8	1	23	170	192	170	192	0.92
5	9	9.6e-06	0.0014	19.8	2.3	1	23	197	220	197	220	0.96
6	9	0.0003	0.045	15.1	0.6	1	23	226	248	226	248	0.98
7	9	1.9e-06	0.00029	22.0	1.5	1	23	252	274	252	274	0.99
8	9	0.00025	0.038	15.3	5.0	1	23	280	302	280	302	0.98
9	9	2.7e-05	0.004	18.4	2.3	1	23	308	330	308	330	0.97

Sequence Information

Coding Sequence: ATGAGAAGAACCTTTAAGCGAAGAAGACTCGCCTCGATTAAAGATTCCAATGAGATTGAAGGTCCAACATTGAGATCCTGCAATGTTTCCACAGAAGAGGATGCTGCGGGACTTCTGTCTCGAGTGAAAGATGAAACAAATGTGACTAATTCAAAGTTGTCTATCAAGAATAGTAACAAATCATATTCTGAAGATATAAAGCCAAGAGGCGTGCTTTACAAACAATTAACAGACGGTAATTATACTTGTGATATATGCCACTCGACGTTTGAACAAAAAAGCAAAATCATGCGACACATAACAAGTAAACATAGCTTTCACAGGCCGTTTAAATGCTCAATTTGCTCGAAGGCTTTCAAGTACAAGTGTGACTTGAAGGCGCATAAGTTGATCCATGAAACAATTGACTCTAGCATGTTACACAGGTGCGATAAGTGCGATTATGGTACAAAGACAAAGAATAACCTGAAGTCGCACTACATCAGAAAACACACCGATGATTACAAATTCTCATGTGAACACTGTGGGAAAAGATTCAAAATGGAGTGGGATCTGAAGTTTCACGTCGGTACACATGGCAGCTCGCAACATATGTGTGACATATGTGGACGATTTTATACAAGTAGCTACTCTCTGTACAAGCACAGGAAAGTTGCTCATCTTAATGACTATAAGTATCAATGCAACGTTTGTAACAAGAGACTTTTGACTCAGGAGAATCTCGACAATCACATGCTGCAGCACAGTCAGACGTACACTTGCAAGGAATGCGCAAAAGTATTTGCCTCGAAACGGTACCTTTCTACTCATATGACGACTCACACTGGCGTTAAGCCTTATCCCTGCCACGTGTGCGAGAAAAACTTTCGTACCTCGCACATGAGGAATACGCATTTACTTACGCACTCAGCTGAACGCCCCCACATATGTGATCTTTGCGGTCAGGCATTCAAGAGAAGATATTACATGATTGAACACCGTCGGAAGCATCCCGACGCTCACCTTTCTTCTCCACCTGTACCACTGGGTAGTATCAGAGGAAATCTCGGAAATATTGCACCCGAATCCTCGGCTTAG
Protein Sequence: MRRTFKRRRLASIKDSNEIEGPTLRSCNVSTEEDAAGLLSRVKDETNVTNSKLSIKNSNKSYSEDIKPRGVLYKQLTDGNYTCDICHSTFEQKSKIMRHITSKHSFHRPFKCSICSKAFKYKCDLKAHKLIHETIDSSMLHRCDKCDYGTKTKNNLKSHYIRKHTDDYKFSCEHCGKRFKMEWDLKFHVGTHGSSQHMCDICGRFYTSSYSLYKHRKVAHLNDYKYQCNVCNKRLLTQENLDNHMLQHSQTYTCKECAKVFASKRYLSTHMTTHTGVKPYPCHVCEKNFRTSHMRNTHLLTHSAERPHICDLCGQAFKRRYYMIEHRRKHPDAHLSSPPVPLGSIRGNLGNIAPESSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00060599;
90% Identity: iTF_00060599;
80% Identity: -