Basic Information

Insect: Neodiprion pinetum
Gene Symbol: -
Assembly: GCA_021155775.2
Location: CM037743.2:345999-350033[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0018 0.27 12.6 1.2 1 23 427 449 427 449 0.98

2 19 0.59 90 4.7 0.3 2 23 479 500 478 500 0.90

3 19 0.0056 0.84 11.1 0.7 1 23 508 531 508 531 0.92

4 19 0.00024 0.036 15.4 0.7 3 23 539 561 537 561 0.92

5 19 0.24 36 6.0 0.2 2 23 595 616 594 616 0.91

6 19 1 1.6e+02 4.0 0.5 3 23 626 647 624 647 0.93

7 19 0.0012 0.18 13.2 2.0 1 22 653 674 653 677 0.90

8 19 0.00025 0.038 15.3 6.5 1 23 761 783 761 783 0.98

9 19 0.0085 1.3 10.5 0.3 1 23 790 813 790 813 0.92

10 19 8.2e-05 0.012 16.9 2.1 1 23 819 841 819 841 0.98

11 19 0.00056 0.085 14.2 2.1 1 23 847 869 847 869 0.97

12 19 1.7e-05 0.0026 19.0 0.8 1 23 875 897 875 897 0.97

13 19 0.019 2.8 9.4 1.5 1 23 910 933 910 933 0.96

14 19 0.00029 0.044 15.1 5.1 1 23 949 972 949 972 0.96

15 19 0.005 0.75 11.2 1.6 1 23 980 1003 980 1003 0.96

16 19 4.7e-05 0.0071 17.6 1.6 1 23 1009 1031 1009 1031 0.98

17 19 0.0059 0.89 11.0 6.9 1 23 1037 1059 1037 1059 0.98

18 19 0.00015 0.023 16.0 2.3 1 23 1065 1088 1065 1088 0.98

19 19 0.024 3.6 9.1 5.2 1 23 1094 1116 1094 1116 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0018	0.27	12.6	1.2	1	23	427	449	427	449	0.98
2	19	0.59	90	4.7	0.3	2	23	479	500	478	500	0.90
3	19	0.0056	0.84	11.1	0.7	1	23	508	531	508	531	0.92
4	19	0.00024	0.036	15.4	0.7	3	23	539	561	537	561	0.92
5	19	0.24	36	6.0	0.2	2	23	595	616	594	616	0.91
6	19	1	1.6e+02	4.0	0.5	3	23	626	647	624	647	0.93
7	19	0.0012	0.18	13.2	2.0	1	22	653	674	653	677	0.90
8	19	0.00025	0.038	15.3	6.5	1	23	761	783	761	783	0.98
9	19	0.0085	1.3	10.5	0.3	1	23	790	813	790	813	0.92
10	19	8.2e-05	0.012	16.9	2.1	1	23	819	841	819	841	0.98
11	19	0.00056	0.085	14.2	2.1	1	23	847	869	847	869	0.97
12	19	1.7e-05	0.0026	19.0	0.8	1	23	875	897	875	897	0.97
13	19	0.019	2.8	9.4	1.5	1	23	910	933	910	933	0.96
14	19	0.00029	0.044	15.1	5.1	1	23	949	972	949	972	0.96
15	19	0.005	0.75	11.2	1.6	1	23	980	1003	980	1003	0.96
16	19	4.7e-05	0.0071	17.6	1.6	1	23	1009	1031	1009	1031	0.98
17	19	0.0059	0.89	11.0	6.9	1	23	1037	1059	1037	1059	0.98
18	19	0.00015	0.023	16.0	2.3	1	23	1065	1088	1065	1088	0.98
19	19	0.024	3.6	9.1	5.2	1	23	1094	1116	1094	1116	0.97

Sequence Information

Coding Sequence: ATGTCGAACATGAGGACTTTCATTATAAAAGTAAATGAGACTGATAACGTGACGCTGGGCGATAATGAAGAGTTTAAAgatttgacgaaaaaattggACGATAATGATATCCACTTCGATGTGACGTCTATTGAGGAAAAACTGCTGACTGAAGATTCAGTTGTTGCCGACAACCAAAACATAGataACACAGAGGTCGAGGATGAGACTGTTGAATTTGTACTGCCAGATTTACCAGAATCCGCAGCTTCGATTAGCAATGATTCCAATGCTCAGCCTATTTGTAATGGATTGCTGTGCCGTTTGTGTGGTATTAAAACTGATGACCCAATTCCAATTTTCAGCAAATTTCAAGACATAAGCCAGAAAATCAGTAACCTAATTCTCGTCTCTATTACACGTGACGACCAGTTATCCAAGCACATTTGTACAGCATGCAATGAGAAATTGGAAGCCATTAATGAATTCATATCCGTCTGCAAAGAAACTGAAAAGAAATTATGCAGTATAACAAAATCGAGAAGCTTACTAAGGGTGAAGCTAAAACGTAAAGCTGATGGAAACAGGGAAAACACTATAATAGTTCAAGATGATATTGCAATTTATAAATGTCCGAACTGTAAAGTCGATCTGAGGATTACGAGGACTGATGAAGCTCAGAATTGTTATAATGGGCCACAGGCTTCCCTTATCGCAACTGATGCATCTACGTCTCCTAATTCCTTTGTAAAAACTATTAAGAACAAAGCTCATACTTCACGAAGTTGTAGTGCCAAGAAAAGAGTTGGCACGAGATTAGGAAAAGCATCGGGGAAATCTGCGAATACAGGCATTGAAGAAAATCATATCAATGATGTTGAAGCAATTGGTGCgactgtaaatattttaacgCCATTAAAATCTACCCGTAAGATAATTTGCAACGTACATCCCGAGGATGACGGTTCCAGCAATTGTATAAGCTctagagaaaaaggaaaaatgaaacttcGAGATATCAGAAAAAGAGCGCCAGTCTGCAGTGCTGTTAACGACGTGGCAATAACGAGAAAACTAGAATCTGATGCATTAGAAAAAGCTTTGTTTTCTTCGAGTTCTGATCTCGAAGTCCCTGGTATAACTGGAGAATTTGTAGAGCTTGATGCTCTGGAAGACAGCAGCAATGAGATTATGAGAAAACGCTCGAAATTTAAATGCGAAGCATGCAAAGCGGAATATTATTCCTATGAGAGGTACTTGTTCCATGTAGAAAGACACGgcaccaaaaatttttatgaattcgTATGCAACGTTTGtaagaaagaatttttaacaGAAGATGATCTGTGGGAACATCATCGATATCATCAGTCCAATAATTCTGAAGGTGGTGAAACTGTGTCTGAAAACGTAAATGCTTTACAGCCAGAGAATAATCAACGATGTACAAAGTCAACTTGCGAAGAATGCGGAGCACGTTTCGTGCTTCGCGAACGTTACGAGTTTCACATGGAGAGACATAAATTGGGCAATATCAAGATATTTTCTTGCATGATTTGCGGTAAGCGATTCAAGAGTGAAAACATTCTTTGGGATCATTATCAGTATCAGCATAAATCTGGAGAACGCATCGCTTGCATGACTTGCAACAAGACATTTGTGAAACGAGCTAATTTGAATTATCATTTAAAAACATTCGGACATAAAGGAGGAAAACGTGTGACCAGCCAGGACCAAATTCGACAGACTGAGACCGACGGTGACTTTAAATTGTCAGATATCAGTAAATCTAGGCCAAAAATAACATGTTCAGACTGCGGAGCGCGTTTCGTCCTTCAGGAACGCTATGAATTTCATATGGAGAGACACAAAACGGGAAGGATGGATGTGTGCCTATGCATGGTGTGTGGGAGGGAATCTACAAACGAGAACGTGCTATGGGACCACTATCAGTACATGCACAAAAGAACAAAGCGATATGCTTGTACAACTTGCGGTAAGCTTTTCCACAAGCAGTCGTTGTTGAGCAGACACCAAGTGAAGTATGGACACAAAGGTTCGAGAGAAATAGATGTTGACACCGATGGAAACGCCCTGGCCGTTGACAGCGCTGCTTTCAAAAAAGTAATAGCAGAAGAGGTCGTTGAAATGAAGTCTGTAAATTGCGTTTTATGCGGCGAAGTCGTTTGGGGTGTAGATCCCAACTTAATAAACGATGCGGTAACTTGCGCGAGCTGCGAAGGACCCGGGCTCTCGTTGCAGGTAGATTCGGACGGAGCTAAAGTAATATCTCGGAGGCAGTATCACTGCAACATGTGCAACAAGCATTTTACAACAAAAGATAGACTGGAATACCATATAATGAGACATTCTGAGAACATGGACGAATTCATATGCAGTACTTGCGGCAAGGAGTTGAGCACGGAACAAGCACTATTCGAGCATTACTTGTTTGTTCATAAGGGAGCAAGGCCGCATGTTTGCGAGTTGTGCGGAAAGTCTTATCAGTTCAAAGCGAGGCTGAAGGAACACATGAGGAGTCACAGCGGGGAGCGACCCTTTGCCTGTGAAATCTGTGGACAGAGATGCATGACCAATAACGCGTTGAGATCTCACAAGAAGACACATATAACTGAGAAACGTTTTCCATGTCAAATATGTAAGAAAGCATTCAGAAAGAGGCAGGACTTGAACGAGCATTTGGAAAGACATTGGAAGAACGACAAGACGATGATGTTCCCCCAAGTTTTCAGCTGCACCGTCTGCTTCGAAATGTTTCCCACGTTTAGGATTCTAAAGAAACACATGAAAGAAACACACAGAGTGAAAAGTCCGGACCCTATATTAACCGATCTCCAACCTTGGTTCGAGTGCGAGGATTGtcatgaaaaattcaagcatCAAATGTCACTGAAGGTgcacagagagagaaagcacGAGGGAAAAATGAGGCCAGTCTACCACTGCGACGTGTGTAACGTGACTTACAAAAATGCTCGAGTACTCTCTAACCATATCAAGAACAAGCACGAGGGTGGCAAGCGGTACAAATGCGCTCAATGCGGTAAAGAATACAACCAGTCAACGTCTCTGCACAATCACATCCTCCTTCATACCGGAGAAAAACCATTCAGCTGTGAGCACTGCGAAATGACATTCAGGACGAAAGAATCCAGAGACCACCATCAAAGGAAACACACCGGAGAACGGCCCTACAAATGTCCACGATGCGACAAATCATTTGCAACAACGACACAGCGTCGCGAACATCGCAAACGTGAGCATGACGAGGGCAATACTCATCACTGTCCAGAATGTGGGAAAGCCTGCTTTGACGAACATGGAGTAAGAAGTCATTTGAACATGCATtttagtgaaaaattcaagaataCGCAAGAAAATCAGACCTGA
Protein Sequence: MSNMRTFIIKVNETDNVTLGDNEEFKDLTKKLDDNDIHFDVTSIEEKLLTEDSVVADNQNIDNTEVEDETVEFVLPDLPESAASISNDSNAQPICNGLLCRLCGIKTDDPIPIFSKFQDISQKISNLILVSITRDDQLSKHICTACNEKLEAINEFISVCKETEKKLCSITKSRSLLRVKLKRKADGNRENTIIVQDDIAIYKCPNCKVDLRITRTDEAQNCYNGPQASLIATDASTSPNSFVKTIKNKAHTSRSCSAKKRVGTRLGKASGKSANTGIEENHINDVEAIGATVNILTPLKSTRKIICNVHPEDDGSSNCISSREKGKMKLRDIRKRAPVCSAVNDVAITRKLESDALEKALFSSSSDLEVPGITGEFVELDALEDSSNEIMRKRSKFKCEACKAEYYSYERYLFHVERHGTKNFYEFVCNVCKKEFLTEDDLWEHHRYHQSNNSEGGETVSENVNALQPENNQRCTKSTCEECGARFVLRERYEFHMERHKLGNIKIFSCMICGKRFKSENILWDHYQYQHKSGERIACMTCNKTFVKRANLNYHLKTFGHKGGKRVTSQDQIRQTETDGDFKLSDISKSRPKITCSDCGARFVLQERYEFHMERHKTGRMDVCLCMVCGRESTNENVLWDHYQYMHKRTKRYACTTCGKLFHKQSLLSRHQVKYGHKGSREIDVDTDGNALAVDSAAFKKVIAEEVVEMKSVNCVLCGEVVWGVDPNLINDAVTCASCEGPGLSLQVDSDGAKVISRRQYHCNMCNKHFTTKDRLEYHIMRHSENMDEFICSTCGKELSTEQALFEHYLFVHKGARPHVCELCGKSYQFKARLKEHMRSHSGERPFACEICGQRCMTNNALRSHKKTHITEKRFPCQICKKAFRKRQDLNEHLERHWKNDKTMMFPQVFSCTVCFEMFPTFRILKKHMKETHRVKSPDPILTDLQPWFECEDCHEKFKHQMSLKVHRERKHEGKMRPVYHCDVCNVTYKNARVLSNHIKNKHEGGKRYKCAQCGKEYNQSTSLHNHILLHTGEKPFSCEHCEMTFRTKESRDHHQRKHTGERPYKCPRCDKSFATTTQRREHRKREHDEGNTHHCPECGKACFDEHGVRSHLNMHFSEKFKNTQENQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01048399;
90% Identity: iTF_01048399;
80% Identity: -