Basic Information

Insect: Neodiprion pinetum
Gene Symbol: gfi1b_1
Assembly: GCA_021155775.2
Location: CM037744.1:3118411-3127789[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.18 27 6.4 4.4 1 23 414 436 414 436 0.98

2 19 0.11 16 7.0 1.3 1 23 442 465 442 465 0.95

3 19 0.00015 0.022 16.1 0.6 1 23 471 493 471 493 0.98

4 19 0.0028 0.43 12.0 2.3 1 23 499 521 499 521 0.97

5 19 0.018 2.7 9.5 0.1 3 23 529 550 527 550 0.94

6 19 0.33 49 5.5 2.8 1 23 557 580 557 580 0.97

7 19 0.00016 0.025 15.9 1.7 1 23 584 606 584 606 0.96

8 19 0.0068 1 10.8 0.9 1 23 612 634 612 634 0.98

9 19 4.6e-05 0.007 17.6 2.1 1 23 640 662 640 662 0.97

10 19 0.00032 0.048 15.0 0.1 1 17 667 683 667 684 0.93

11 19 0.21 31 6.1 0.5 2 18 1189 1205 1188 1207 0.80

12 19 0.00042 0.063 14.6 0.4 1 23 1245 1267 1245 1267 0.98

13 19 0.024 3.6 9.1 1.8 1 23 1273 1295 1273 1295 0.98

14 19 0.0013 0.19 13.1 1.4 2 23 1302 1323 1301 1323 0.96

15 19 0.17 25 6.5 1.2 2 23 1330 1352 1329 1352 0.93

16 19 0.00026 0.04 15.3 0.3 1 23 1356 1378 1356 1378 0.98

17 19 0.00032 0.049 15.0 2.3 1 23 1383 1405 1383 1405 0.98

18 19 1.6e-05 0.0024 19.1 1.4 1 23 1411 1433 1411 1433 0.98

19 19 0.00011 0.016 16.5 0.3 1 22 1438 1459 1438 1459 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.18	27	6.4	4.4	1	23	414	436	414	436	0.98
2	19	0.11	16	7.0	1.3	1	23	442	465	442	465	0.95
3	19	0.00015	0.022	16.1	0.6	1	23	471	493	471	493	0.98
4	19	0.0028	0.43	12.0	2.3	1	23	499	521	499	521	0.97
5	19	0.018	2.7	9.5	0.1	3	23	529	550	527	550	0.94
6	19	0.33	49	5.5	2.8	1	23	557	580	557	580	0.97
7	19	0.00016	0.025	15.9	1.7	1	23	584	606	584	606	0.96
8	19	0.0068	1	10.8	0.9	1	23	612	634	612	634	0.98
9	19	4.6e-05	0.007	17.6	2.1	1	23	640	662	640	662	0.97
10	19	0.00032	0.048	15.0	0.1	1	17	667	683	667	684	0.93
11	19	0.21	31	6.1	0.5	2	18	1189	1205	1188	1207	0.80
12	19	0.00042	0.063	14.6	0.4	1	23	1245	1267	1245	1267	0.98
13	19	0.024	3.6	9.1	1.8	1	23	1273	1295	1273	1295	0.98
14	19	0.0013	0.19	13.1	1.4	2	23	1302	1323	1301	1323	0.96
15	19	0.17	25	6.5	1.2	2	23	1330	1352	1329	1352	0.93
16	19	0.00026	0.04	15.3	0.3	1	23	1356	1378	1356	1378	0.98
17	19	0.00032	0.049	15.0	2.3	1	23	1383	1405	1383	1405	0.98
18	19	1.6e-05	0.0024	19.1	1.4	1	23	1411	1433	1411	1433	0.98
19	19	0.00011	0.016	16.5	0.3	1	22	1438	1459	1438	1459	0.96

Sequence Information

Coding Sequence: ATGGCGTTGGAAGAGGAGGCGCAGATCTGCAGGCTTTGCGGGCAGTGCGAGAGCATTTACATTGACGTATTTGGCGAGGAAGGGACCAAGAGATATCTGGGCTTGAAGATTCACACGAAAATCAACATTTTGATAGATGAGATGGACCCGCTGCCCAAGGCGATCTGCGTACAGTGCCTGGGCAAGCTGGAATTCGTTTGCGATTTTCAGGAGGAATGCCTTCGCACCCAACAACTGTTGCGCGATCGTTTCAATTGGCCATCTCCCACTGACGTTGATGAAGTGAAAAACGACCAAACTCCGTCTTGTCCTCCAATGAACAACAATAACGTCGACAAAAACCAAAATCCCCCAGGTGAAGATGCCGTTTCCAAAGACTGCAATCAAAGTCTACCTTTGGATGGCCAAATTTCACCTATCGTTGAAGGCACTGGTATATCAATTGACCCAGATTCGGTTGAAACGTCAGTCACAAATCTGCCTATAAAGCAACCTCAAGTTGATATTTTGGTGGATTTAACGGAAAAAACAGCAAAAACAAATACAACTCAATGCGATAATTTGCAAAATACTCAACAGCCAATTAGTAAAAGTAacagtagtagtagtagtcgtagtagtaatagtaataataatagcagcAGCAGTAGTACAAATAACGATACACCTGGATTTGACATAAACGAAGTCTGTCAGAATGCACCAATTGCAAATAGGCTACGAAGCCACGGCAATAACACAGAAAATATTGGCTCAGTGGCCTGCCAGAATTCAGAGGTGTCTGAGCCATCCCAGGAGCATGGTGATATGATACAGATTCCCACTTCTGCCTTGAACAAGGTTCTTACAACTGTTGCTAATTCAGAGAATATGCAAGTCACGGTCAAAGAATCTACAGGTATGAATGGTTGCAATGAGGACATCAACTTCATTATTGAGTTGCGGCACAAACAAAAAACCGACTGTGTTACCGTCCTGGCCAAGGTGTTTCCTGATCAGGGCTCATGCATGGTAGATCGTGGGGCTATAGTAAAACTCCTTGAAAATCAGAACGGCTCAGAGATTCGTGCTATTGTTGACAAAGTATTCAACCGAACGAACTCTAAGGAGGATGAAGATGGGGATGTTGAGGCACGGCTACTAGCTGGACGGAATCCAGAAGACCTCTTCCGCATGGACGGAGAAGAAATTAGCGTGGATGAAAACATTGAGCAGACAATTGTGGACAAGCGATCGCGCTACATTTGTCGGCTTTGCCGAAAGAAATACAGCCGCAAGGACAAGTGTATCGTTCATGTCAAAACTCATCTCGGGATAAAACAATACTTGTGTACCCTCTGCCCAGCTAAATTTGTCTGCAAGTCTGACGTTCTGAAGCATATCAGGTCCACCCACACAAATCCAAGGCCCTTCCAATGTCCCAAGTGCCCAAGGAGATTGCGGTCTAAATTCGACCTCACAGAACATGAGAATGTACACCAAGGCATAAAGCCATATGCATGTGACGAATGCGGCCTTCGATATCACCATAAAGTTTCACTACAAATGCATGCCAAGTCTCACCTACCCTCCCAGAATCTTGCGTGTGAGTACTGTGGCAATGTGTTTCCGTTTCGCACGAGACTGCTGAGCCACATAGCCAGCGTTCATATGAAGAATCGGCGAAATTTCCGATGCCACTTCTGTTACAATTTGTACTCTAGCTTATCCGTACTAAATGACCATATCAAGTCCAGCCATGCTGCAACCCATGTCTGCGAAGTTTGCGGCAAAGAGTTCAAAGTAAAGTCGAAGTACAAGAGTCACGTGCTTCAGCACAAAAATCCAAGGCCGTTCAGTTGCCCCATTTGCAATAATAAATACGCTTCTAGGACATTTTTGAGTGAGCATCTATCGAAACATCAGGGCCTTCGTAAACATGTATGCCAGAAGTGTGGTGCAACTTTTGCTCAGGCAAGTCATCTGGCTGCCCACAGACACGTCCACGGAGAGAAAAAGTACCCTTGTCCTGATTGCGGACGACGTTTCAACCGGCAAGATAACATGAAGatcAAGGAGGATGATGGATTGACACAGAAAGTTTGCATGCGGTGCATAGGCACCTTGGAATTTGTTAGCGATTTTCACACCAAATGTCATGAAACACAACAACAACTTTTACAAGCTaaagaacgaacaaaaaaattgaccgagcGTGATGTTAAAGTAGATTCAGAAGTggataaagaaaatattttgccGAACAACAGCTTGATTAGATCTAATGGAGCTGAATTAAAAGTCTTGCCTACCACAGAAGATGTAAAGTTCGAAGGAAACAGACCCttcgaacaaatttttgaatatcacAACAAACAGTCTTTACCAAGAAAGAGCAGTCGCattcagaagaaaaaattaaacaaagtcAAGATACTTAAAGAGGAGAACAAGGTTTTTGAACGTGTGACCGGCTCTTTGGAAAATATTGGCAATTTAAGGGAAAACGGAGTAATGGAAATTTCAGAGTGTCAAAATCAGAGAACTTTGCCTAATAAAACATGTAAGGCAGCATTGGCCCGGAGCCGTAATTCTAAAACAATAAAAACCCATGGAAAAAGTTGCAATGGTCTTGGCCAAGGAGGCGCTACACTCACCCATAGTGACAAACGAAAAATAGGGCGGAAAAACTGTGGTAATaggaaaatgcaaaaaaatgaaagcaaAAATCTAGCATGTTCAACTTCGTGGAAGAACAATTTGATGGAAAGAGGTGTCAGAGGTACAGGTAGAGCTGTACAGGGGATTATTAAATTCGATGGTAAATGTTCCAAGCATAATTCTCGGAATGAGAATAATTCCAAGAAATTCGATGAGCAGCTTACAACTTTCACTGAGGATAAAATTAACGAATCTAACAATGTACCAAATATGCTAAAAGGTGAGAACTCAAATTGGACAATGAATCGAAGTgagaaatttgtgaaattacGAGCTTGTGCTATAATGTCAATCACACAATGTTCTTCAAGAGGAGTAGGCGCAGAATCAGTTGAGAAAAGTCCCCAACCTGGCGAGGAGGCTGGAGAAATACAATCCTGGAAGTATGATACAACGAAAGAATGGGCAGGTgacgatatttcaaaaattgaatctgTACAAGATGTCGGGCGTGAAACGAATTCCACAGCAGCTTTGCTGGTGAGAAACTCAGTGATCAAATTGGTAAAGGATGTTCAAACAAATAGAGGTGATGAATTTGCATCGGCATTACTAACAGTGGTAGGTTCGTCAAacgatgaaataaattgtcAAAGAAACGAGTCGAAGATCATTGACGCACCATTGTCTTTAATAGATTCATTGAAGGACGATGGTTCGCAAGAATTAAATAAGCATAGTAAACGAAATGTTACTAGTTGTCAGGATAGACGAAAAAAGTCTGAGGGTCGATTTGGTAAACTTACCGAACTGATAACAAACGAGCAGAAGGAGATCATAGAAACTCTGTATACTGTGAACATGGGTGTAGTCAATGACGAGAAGGTTcacaaaaatataaagattTTAGATAAAGTGAGAGTAACGTGTTCAATATGTGGAAAGATATACTCAAGAATGGACAAATGCCAGGTGCATGTTTGGGGTCACCTAAACATGAAGCCGTATTGTTGCAAATCGTGCGACTTTGTCACACTAACAGTGAGCAACATTCGCTGCCACATAAGAAAACGTCATTTAAAGATTAAACCGTTCCACTGCAATCTATGTGAGAAAAGTTACGGCACTGCAGTCTTGCTAGAGGAACACATTAATTCTCATACGGGTGCAAAACCTTACAAATGCAAAATTTGCGACTTCGCCACTTCCAACAGGCAGGTGCTGAGCTATCACAAAACTACCCATAAACCCGCGAAAGATATATCCTGCGAGGTTTGTGGCAagaagtttttctcaaattgcaGAATGCGAGCACACATGATTGTGCACAAAAAAGATAGGAGTCTGATATGCAAGCTTTGCTCTACATATCTTTGCAATGCAGAGGCCCTCAAAAAGCATTACGACAAGGTTCACTCGCGGGACTACATCTGCAGTGTTTGCGGTATACGAACCAAGTCGAAAAAAGCTTTAACCAACcatgaaaaaGTACATTCAGCAGCTAAATACAGGTGTCCACTTTGTTCAAACGTCTACAAAAGTAAACATATGCTGAAGGAGCATATTCTTAAACATCAAGGAATTCGAAAGTACAAATGCGAATTGTGCCAGAAGTCTTTTGGCCAACAATCCCACATCTCTGCTCATATGAGCGTGCATATGGGTAAAAGATATCCATGTCCTGGCTGCAGTAAACTCTTCAACCGTAAAGACAATATGAGAATCCATACACGACGCTGTAAGGTATTCAATTCTAATCCGGAAATGAAGAATTTGTGGATGGATCAAATGGATGCTACCAGTTCTTGTGTAACGAATACCAAATCCGTCTCGGTATCAGAAGCGCCCGCCATACCAGCTGCTACAACGCAAGCGTCTACTTATTCAAAGcctaatgaaaaaattgagacTAACTTAGGAATGACGAAGATAAACTTACCGGACACGACTGATGATTCTACATCTTTTAAATCGACCTCGGACCTACGAGATTCACGTGACTTTATACGTGATCAAGGCATTGGGGAATTCAAATCCGACAAGGATGGAAAAGTTCTACGACTGGGTGAAGTAGAAGTATTCCCACTGCCAAATACCAACATAATCGCTTTTCAGAATGAGGGTAATATGGTTATTACCGAGAATGTACTGAGACCCGAATGTTTTTAG
Protein Sequence: MALEEEAQICRLCGQCESIYIDVFGEEGTKRYLGLKIHTKINILIDEMDPLPKAICVQCLGKLEFVCDFQEECLRTQQLLRDRFNWPSPTDVDEVKNDQTPSCPPMNNNNVDKNQNPPGEDAVSKDCNQSLPLDGQISPIVEGTGISIDPDSVETSVTNLPIKQPQVDILVDLTEKTAKTNTTQCDNLQNTQQPISKSNSSSSSRSSNSNNNSSSSSTNNDTPGFDINEVCQNAPIANRLRSHGNNTENIGSVACQNSEVSEPSQEHGDMIQIPTSALNKVLTTVANSENMQVTVKESTGMNGCNEDINFIIELRHKQKTDCVTVLAKVFPDQGSCMVDRGAIVKLLENQNGSEIRAIVDKVFNRTNSKEDEDGDVEARLLAGRNPEDLFRMDGEEISVDENIEQTIVDKRSRYICRLCRKKYSRKDKCIVHVKTHLGIKQYLCTLCPAKFVCKSDVLKHIRSTHTNPRPFQCPKCPRRLRSKFDLTEHENVHQGIKPYACDECGLRYHHKVSLQMHAKSHLPSQNLACEYCGNVFPFRTRLLSHIASVHMKNRRNFRCHFCYNLYSSLSVLNDHIKSSHAATHVCEVCGKEFKVKSKYKSHVLQHKNPRPFSCPICNNKYASRTFLSEHLSKHQGLRKHVCQKCGATFAQASHLAAHRHVHGEKKYPCPDCGRRFNRQDNMKIKEDDGLTQKVCMRCIGTLEFVSDFHTKCHETQQQLLQAKERTKKLTERDVKVDSEVDKENILPNNSLIRSNGAELKVLPTTEDVKFEGNRPFEQIFEYHNKQSLPRKSSRIQKKKLNKVKILKEENKVFERVTGSLENIGNLRENGVMEISECQNQRTLPNKTCKAALARSRNSKTIKTHGKSCNGLGQGGATLTHSDKRKIGRKNCGNRKMQKNESKNLACSTSWKNNLMERGVRGTGRAVQGIIKFDGKCSKHNSRNENNSKKFDEQLTTFTEDKINESNNVPNMLKGENSNWTMNRSEKFVKLRACAIMSITQCSSRGVGAESVEKSPQPGEEAGEIQSWKYDTTKEWAGDDISKIESVQDVGRETNSTAALLVRNSVIKLVKDVQTNRGDEFASALLTVVGSSNDEINCQRNESKIIDAPLSLIDSLKDDGSQELNKHSKRNVTSCQDRRKKSEGRFGKLTELITNEQKEIIETLYTVNMGVVNDEKVHKNIKILDKVRVTCSICGKIYSRMDKCQVHVWGHLNMKPYCCKSCDFVTLTVSNIRCHIRKRHLKIKPFHCNLCEKSYGTAVLLEEHINSHTGAKPYKCKICDFATSNRQVLSYHKTTHKPAKDISCEVCGKKFFSNCRMRAHMIVHKKDRSLICKLCSTYLCNAEALKKHYDKVHSRDYICSVCGIRTKSKKALTNHEKVHSAAKYRCPLCSNVYKSKHMLKEHILKHQGIRKYKCELCQKSFGQQSHISAHMSVHMGKRYPCPGCSKLFNRKDNMRIHTRRCKVFNSNPEMKNLWMDQMDATSSCVTNTKSVSVSEAPAIPAATTQASTYSKPNEKIETNLGMTKINLPDTTDDSTSFKSTSDLRDSRDFIRDQGIGEFKSDKDGKVLRLGEVEVFPLPNTNIIAFQNEGNMVITENVLRPECF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -