Npin014368.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neodiprion pinetum
Gene Symbol
-
Assembly
GCA_021155775.2
Location
CM037742.1:41708619-41711406[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.5e-05 0.0022 19.2 4.6 1 23 266 288 266 288 0.98
2 12 0.00014 0.021 16.1 1.4 1 23 293 315 293 315 0.97
3 12 0.00022 0.033 15.5 1.6 2 23 325 346 324 346 0.97
4 12 4.5e-06 0.00067 20.8 8.4 1 23 438 460 438 460 0.98
5 12 0.00069 0.1 14.0 1.4 1 23 465 489 465 489 0.91
6 12 2.5e-06 0.00038 21.6 0.6 1 23 528 551 528 551 0.93
7 12 9.2e-07 0.00014 23.0 1.5 1 23 585 607 585 607 0.98
8 12 0.00016 0.025 15.9 4.0 1 23 621 643 621 643 0.96
9 12 0.00015 0.023 16.0 4.7 1 23 649 671 649 671 0.98
10 12 0.0014 0.21 13.0 3.2 1 23 677 699 677 699 0.98
11 12 4.7e-05 0.007 17.6 6.5 1 23 705 727 705 727 0.98
12 12 0.00022 0.033 15.5 0.3 1 21 733 753 733 754 0.93

Sequence Information

Coding Sequence
ATGGACGTGAATGCTGAAACGAGTGTCTCTCGAGAGAACTTGGATGATGTATGTCGTGTTTGCCTTTCCTCCGATCCTGGCAACGAGTTTATTTTCCGAAATGAGGCCAAGATTTCAAATACTAACAACAAATTTACGTTGTCCGAAAAGCTCCAGCTTTACGGTGGCATAGAGATCTGGGAGGACGATGGGCTGCCTGCCAAAATTTGCACGCTTTGCATCTCTAAAATTAGCGTCGCACACGATTTTCGTGATCAGTGTCAAAGAGCTGACCAAAAGTTGCGAAAATTATATGGCAATCCAGCAGGAAGAAACACTTTGAAACTTTCCAGTAGTTTTAAGGATCAGTACTGTCAAACAGATTCGTCATCGTCATGTGtcaagaaagaagaagaagtcaGCATTACTGAAGAGGAAACCAAAATGCAGCAAAATGTCCCAATTAGTAATCGGTTGACCACAGAGATCCAAGCATCTCCTTGGAACAATTGTACAGAGGACATAGAAGTTCACGAGCATAAAATTTTGCAAGACATTAATGTTGATGTGCCGCAAGCAGAAAGGGAGAAAAGCTCAGTGAAAAGAGAGTCGTACAGAACTCGCAGGGTGTCGATGTTCAAAAGAATGACATCTatggaaaatttaaaaagtcaCAAAGAAAGACAGAGacagtatataaaaaaaaacacaagttCCAAGGTGGAGTCTATAGAGCAGGATTATTCAAGCGTAAAGCGGATGACTCGCAATAGGATAACTAGATCGATGGAATACAATTTGGAATCAGAGCTCTCTCACAAGTGTAGCAAGTGCAATAGATCTTATTCGACGAAAAAGTCGCTGGAGAGACACGCATTAACTCATGATAGTAAAAAGTTCAAATGCGATAAATGtggtaaagaattttttagacTGGACAAGCTGGTTGAGCACAGTAAACTACACGTCTCGAAGCTCAAACCAGAGCCTGTATACTGTAAAATATGTGACAAACACTTCAGAAAAATAGATACTATGGTCCGACACCTAAATGTCCACAAGAAAGTTAATCCTAGGGAAGTTTTCACTATACTAAAAGAAATTAGGGACAGACGAAAGgcggaaaatgaaataaaaaattgtatagaGGATGGGAACAGTGGAATTAAAATCGTGAAGGCGGAGCCGAGTAATCAGGAAAGTAGTAGCGGGGATGAAGAGATCAGCAAACGTCTGCAAATGTCAAATGATAATCAAGACTATAACCCAGACTCGCTGAACTCGGATTCGCAGAGCGAAAGCGAGACGGATTCTTTTAATAATCTAGCTTTTTATAGATGTAAACACTGCACCAAGTGTTATTCTACAAAAAAATCTCTACAGAGACACATGTTGATACACGACGAGAAGAAATTTGTTTGCAATGTTTGCAACATGAAATTCTTTAGGCCAGACAGATTGAAAAGCCACAGAAACAGGTATGGGCATGATGAAGACAAAGAATGCTTGGAGCCTCAAAAACCGCCGGATGACAAATctgcaataaaattaataaacagtTGGATAAGAGAGGAACTGGATTCCGACAACGAAGGAAAGGGGTTCCCATGTGAAATTTGTGGTAAATCTTACGTGACCAAGAAATCATTGCAGAAGCACAAGGCAAACATGCATGAGAACAGAGAAGACTTTTGTGACAATTGCAAAGCGGATAAATGTAAGTGCGCTGaaagggtgaaaaatattgacaagaagaatgaaaagttgaaaccATTCAGCTGCGATGAGTGTAACAAGTCCTTTGAAAAGGAATCAAAGCTAGAAAAACACTTGAGAAGTCATGAGCGTGCCAAGGAACAGCAGGactcaaatttcaaacgatttttgtGTCACATTTGCAGCAAAACTTTTCGTCAAAATACAGGACTCATGTTCCACATGCGGACGCACACTGGCTATAAGCCGCATGTGTGCAAATATTGCGGACGTGGTTTTACATCCAATTCAAATTGCATTAATCATGAAAGAACTCACACTGGAGACCGACCTTTTGTGTGCCATTTTTGCAGTGCAGCCTTTGCAAAATCTTGCACTCTGAAAGCGCACATTACAACTCACACGGGAGAAGCTAATTACCACTGTAAAACTTGTGGAAAATCGTTTCGACGACTTAAGTACTTGAAGGAACATAGATTTACGCATACTGGGGAGAAACCGTACGCCTGTAAAATCTGTGGCACTGCTTATAGTCACTCCGGTAGCTTGTTTgtccatgaaaaaaaatgcaaggCTCAATACAGCAACTATCAAGCCGTTTCTGAGCAAAATGCGCAAAATTATACCCAGTCGCCAACTGGGCTCAACACCTCGTCGGTCATGGCTCCTATTATTCCTATGCTCTCTTCATCGCACCATTTAAATAACGCTAATAATTCTCTGGGGGGTCATGCTAACAAAAATTATGTCGAAAGTATGCAGAGAATGAATGCACATGCAGCTGCTGTCGCAGCAGTTGGAAATCCAGCTTTGCATATGTATCCGAACCCGGAAGTTTCAGAGATGGCTTCAGCTGTGAGAAACTTCGCCATTATAGGACAAATATTTCACTCGTAA
Protein Sequence
MDVNAETSVSRENLDDVCRVCLSSDPGNEFIFRNEAKISNTNNKFTLSEKLQLYGGIEIWEDDGLPAKICTLCISKISVAHDFRDQCQRADQKLRKLYGNPAGRNTLKLSSSFKDQYCQTDSSSSCVKKEEEVSITEEETKMQQNVPISNRLTTEIQASPWNNCTEDIEVHEHKILQDINVDVPQAEREKSSVKRESYRTRRVSMFKRMTSMENLKSHKERQRQYIKKNTSSKVESIEQDYSSVKRMTRNRITRSMEYNLESELSHKCSKCNRSYSTKKSLERHALTHDSKKFKCDKCGKEFFRLDKLVEHSKLHVSKLKPEPVYCKICDKHFRKIDTMVRHLNVHKKVNPREVFTILKEIRDRRKAENEIKNCIEDGNSGIKIVKAEPSNQESSSGDEEISKRLQMSNDNQDYNPDSLNSDSQSESETDSFNNLAFYRCKHCTKCYSTKKSLQRHMLIHDEKKFVCNVCNMKFFRPDRLKSHRNRYGHDEDKECLEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCEICGKSYVTKKSLQKHKANMHENREDFCDNCKADKCKCAERVKNIDKKNEKLKPFSCDECNKSFEKESKLEKHLRSHERAKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQAVSEQNAQNYTQSPTGLNTSSVMAPIIPMLSSSHHLNNANNSLGGHANKNYVESMQRMNAHAAAVAAVGNPALHMYPNPEVSEMASAVRNFAIIGQIFHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01048380;
90% Identity
iTF_01048380;
80% Identity
-