Npin019458.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- -
- Assembly
- GCA_021155775.2
- Location
- CM037744.1:1004970-1010712[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.24 37 5.9 3.9 2 23 272 294 271 294 0.96 2 22 0.046 6.9 8.2 1.8 1 23 400 422 400 422 0.98 3 22 0.0021 0.32 12.4 2.4 1 23 471 494 471 494 0.96 4 22 0.0014 0.22 13.0 0.3 3 20 548 565 547 567 0.93 5 22 0.98 1.5e+02 4.0 1.3 1 23 579 602 579 602 0.88 6 22 0.015 2.2 9.8 1.4 3 23 609 629 607 629 0.95 7 22 0.0019 0.29 12.5 0.1 1 23 674 696 674 696 0.97 8 22 0.00065 0.098 14.0 0.1 1 23 702 724 702 724 0.97 9 22 1.1e-05 0.0016 19.6 1.0 2 23 767 789 766 789 0.93 10 22 0.00021 0.032 15.6 1.0 2 23 797 819 797 819 0.97 11 22 5.9e-05 0.0089 17.3 0.3 2 23 827 849 826 849 0.96 12 22 0.23 34 6.0 0.9 1 11 857 867 857 879 0.88 13 22 0.0068 1 10.8 0.2 2 20 938 956 937 956 0.95 14 22 0.07 11 7.6 0.1 2 23 976 997 975 997 0.95 15 22 0.0022 0.34 12.3 2.5 1 23 1024 1046 1024 1046 0.96 16 22 0.00019 0.028 15.7 3.8 1 23 1068 1090 1068 1090 0.97 17 22 8.6 1.3e+03 1.1 0.2 1 17 1108 1124 1108 1129 0.83 18 22 0.02 3.1 9.3 1.8 3 23 1186 1207 1184 1207 0.95 19 22 0.00011 0.017 16.4 0.1 1 23 1237 1260 1237 1260 0.93 20 22 0.0019 0.28 12.6 0.4 2 23 1268 1289 1268 1289 0.97 21 22 0.0015 0.22 12.9 0.5 1 23 1294 1317 1294 1317 0.97 22 22 0.00018 0.028 15.8 1.2 1 23 1351 1374 1351 1374 0.91
Sequence Information
- Coding Sequence
- ATGGACGATGCGGCCTCAACACCGAACGTCGAAAACGTCTGCAGGCTCTGTTTGTCCGCTGACGAACCTAGGTCGTCGATTTTTGAGGGGGATGATTCGTCGGTGCCGCTATCTTTCAAGATACAAGCCTGCCTAGCTATTGAGGTCTCATCGTCCGACAAATTGTCAACTCTGATATGTCGGTTGTGCATCAAAAACGTGAATCAATGGCACAGTTACAGAGAATCGTGTCTCAAGGCCCAAGACAAATTGCATCAGTGGCAAATGCAGCAGATAGGGGTCCAGACGGGTGTAACCATAAAGCAGGAGCCAATTGATTTGGAATTTGATACTGATCATAATGTCTCCATAACAGAACTGCACGGAACACCTGAACACCAAGAAATCCAAAATGACGGCGTAATggcgctaaaaataacgaatgagCAAACAATTCGACTGGGGAAGGATGCGgagaaatcattgaaaagtGAAACCTTATGGAGGCGAAGAACCCGAAGTTTTGCTCTGTCAACTTCTCCATCAGGCCTGCCTCAGGAATCTGAAAAGTACCAAACAAATTCAAAACCGTATTGTACAGTGGAGGTGAAGGAAGAACCACTAGCCGAGGACGAATACGACTCTACCTTGGAAATCGAATCTGTAACAGGCGGTGACATTTTGCCTAACCCCGTAGCGATGAATTGTACAGAAAAAGACAGAGTGATGGAGGCTGATTCGACACAGAGATCCACTTCTGTAACCTTCAGAACAAAGAGGAGAGCAAAGAGAGGACCACACACCCATTTGAGAAACAAACAGAGGTTCACAAAGAAATGCGTCTATTGCCAAATAAACCTGCACTCCAAATATTCATACACCAAACACATGGAAAGATTTCATTCTGCTGTCTCTGATTCTGAACAAAGGGACAACAAAATggggttgaaaaatgttctaaAGCAGAAACAAATCTTTACAAAATCTCCATCTGCGTCGTTTCAAGATCAGATTAGACTTAATAGGAATAATCCTCAAGATGAAACAGTTGATAGTATTCCAGAAGAGAGCAGCGCCACGGTGGGGATAAACAGTTACCGCAGGGACGTAGACGAAGAGATGATCGAAGATGTAGAGGACGAGATAGACAACATGGATAAAAATTCAGATATACCGCTCTCTCAAGTACAACAGAATATAATTGGTCAATTAAAAACCTACTCTTGTTACTCCTGTAAACAGGTTTTCCCCGACCGACGCACAACACTGAATCACTTGAGGCAGCATCTGCCGGACCTTCGTCCATTCACCTGCGTAGCTTGTCTCACGCAATTTCCGGATCGTTCGATCTACAAAGATCATTGCTACACCTCGTTTGAATGTGCAATGAAAATTGCAATAGTCGAGCCCAAGTCTGGTTTAGAAAAACATTTCACCTGCAATATGTGCTCCAAGTCTGTGGAGAATAGAAAGGAATTGTTACACCACTTGACCTCTCAACATTCTGACGAACAACAGGCAAACGCTACACCGACTTCTTCTAATAAAATGCCTGCAAAGATAAGCAACAGAGACGGTTCGTCCCCATCTACCGGCTGGTCTTGGGCAGGTCTAGGCTTGCCTGCTCCCTATCAAAATGGAGACCCTGTATATAATAACCCCTGCAATTACTGCGGTATGATTTACAAACACAAGCGAAATTTATTGGAGCATCGTGAACTGTGTGCTCGCCTTCCGGTCAACGCTAGAACTTCTTACGCCTGTGTGCACTGCGGTATGACTTTCCTTGTgttcaaaaagttttcaagCCACCTTGCAACGTTGCACAATACAACTGACATTATATGTGCAAAGTGCCGAAAATCTTTTGATTCAGCTACCGATTTCCTGACTCATCACGAAAATCATATAAGAATGGACGATCCACAAGGCAGTGGAGACAACAGAAGATCTTCGACCAGCTTTGAAAGTCCATTAAAAGATTGGAACGATTTCGAAGCTGAAGTACATGCAAACGAATCCAGAATCAGTCGGCAAAAGTACAGCTGCGCGCTATGCGGTCAAGAATTTCCTACTAGAACGGAGCTTGGGGAGCACCGAAATCTCCATTTAAAagtgaagatatattcttgcGTTATTTGCCGTAGCATGTTCAGTAGCGCTGGGGCGCTGGAAGTTCACATGAAGGATCATGGAATAGAAGATCCCGCAGAACAAAGCGCGCACACTTCCTACATAGAGTACGAAGGAACCGAAGACACGAAGGACTTTAACTTGACGGAGGGTTCGCGAGGCTCGGAAGCTGACGACGAAGAAACAACATGCAAGATTTGCCAAAAGAGGTTCTCAAGTTTAGCCAATCTGAGGAGGCACACAGCGAATGTACATAGAAATAGCAAAAGGCGACGAAAATGCGTAGAATGCAACAAGGTATTTACCAAGAAAAATTCTTACGAATATCATGTGAGGATGGAACACAAAGGGCTTTCTCCGCCCATAAAATGCTCCGTTTGTCCTCAAACATTTATTAGCAGGactaatttgaatttacactACGAGACGGTCCATGCCCATGTAGCAAAAGCGCCGTACGAATGCGACATATGCGGTAGACAGTTCAAAGAAGATCTATCTTGTAAAATTCACCGGGGATGGCACGCACGTAGATCACGTCGACTGACCGAAGACTTAGCTGCCGTCAACCGCAATAGTACTTTGATGTCGTCGCGATCCCTCGAGAATTTTGATAATCCGATAGAATTGACACAGAGGCCAGCAAGAGCGCGTAAATCGTTTCCAAATTCACCGCCGGCGAAGCCCGCTCCTCAATTGCAGTGTCAGGTCTGCGACAACAAGTTCAGTGACGTAACAGAACTGAGAAAACACCTTTGGGACGTTCACTGTGCCCGTAATAAGAGCGAGAAAGATTACACAACTAGCGACCTACAGTGCGAACTGTGTACTCACATCTTGCCAGATAGACCCAGCCTGGAGAGGCACTTGGAATGGCATATGGAAAACCCAATATTGAGTGATACGAAAAATGGATTACAGAGAAAAAGGTACTTCTCGCCCACGGACCTGAGGACTCATCCGTGCGATGTCTGTGGCAATTTTTACACGTCGAGAAAGAGCTTGCTGAGACATAAAAAACTTCACAAAGTCAGCACTGCCGCTACTGTCAAGTTTCAATCGCTGGCCAAGAAACCATCGATTACCCAATTTCCTTGCAACGTCTGTCACAAGACATTCGGCAGTTCGATGAAACTCCGCAAGCACAAACTCCGTCACTTTGTAAACCCAGCCGAACGCAAGAAACGCTCTGTTCTTGAGAAGTCCGACTTTAAGTGCGAGCTGTGCTTGAAGTATTATATCTCCGAGGTCGGACTGCGTTTTCATGTGGAAAAGACTTGTCCGTTTAGGGAGCAAGAAACATACAGTCCTCGCCTAAAACGTCGAAGAATAGCGTCGACCGAAGAAAGTGCCCCTTCGGCTGAGGTCGATCCGCCAAAACATCTGTCCGTAAAGTCAAACGTCGGTCTTCCCGTCGCCTGGAGAATGAAGAAGATGGTGAACTGCAGCATTTGCCACAAGTCCTTCCTTGGCAAAAGCCTTTTTTACAAGCACAGGCAGATCGCTCATCCGAAGGAGATAACAAGCCGGGCAGAAGTGCTTTCCGTAAAGAAACAAAGCCTCGCGGCTACCGCTGCGACGGAcgttacgaaaaattttcggtgCAATATATGCGGCAAGACGTTCCCGGCCGCCCTCAATCTAAAGCTCCACAGGTCCGCTGTTCACAAACACGCTTCACTGAAGAATACCTGCGCTATCTgcaatctgaaattcaactcGGGCGTCGGGTTGAAAAATCACATGCAAAAACACTCTACCGATACCTTCAGCTGCAACATTTGTACCCGAATATTCCGTTCCCGGCCAGCTGTATTCATTCACCTTAACCGACAGCATCCCGAAGAGTATGACCTTATGCAGGATAACAAGTCCAAACTGTTCACCGAAATACAGGGAATCCCTGAACAACCTCTTGAACCGGACGTAACAGTTCCGTTCAAGTGTGGCTTGTGTAACAAGACATTTGAAACGAAGAAAGGTCTTAAAGTTCACAGCGTGAAACTTCATTCCGTGCGtcatgaataa
- Protein Sequence
- MDDAASTPNVENVCRLCLSADEPRSSIFEGDDSSVPLSFKIQACLAIEVSSSDKLSTLICRLCIKNVNQWHSYRESCLKAQDKLHQWQMQQIGVQTGVTIKQEPIDLEFDTDHNVSITELHGTPEHQEIQNDGVMALKITNEQTIRLGKDAEKSLKSETLWRRRTRSFALSTSPSGLPQESEKYQTNSKPYCTVEVKEEPLAEDEYDSTLEIESVTGGDILPNPVAMNCTEKDRVMEADSTQRSTSVTFRTKRRAKRGPHTHLRNKQRFTKKCVYCQINLHSKYSYTKHMERFHSAVSDSEQRDNKMGLKNVLKQKQIFTKSPSASFQDQIRLNRNNPQDETVDSIPEESSATVGINSYRRDVDEEMIEDVEDEIDNMDKNSDIPLSQVQQNIIGQLKTYSCYSCKQVFPDRRTTLNHLRQHLPDLRPFTCVACLTQFPDRSIYKDHCYTSFECAMKIAIVEPKSGLEKHFTCNMCSKSVENRKELLHHLTSQHSDEQQANATPTSSNKMPAKISNRDGSSPSTGWSWAGLGLPAPYQNGDPVYNNPCNYCGMIYKHKRNLLEHRELCARLPVNARTSYACVHCGMTFLVFKKFSSHLATLHNTTDIICAKCRKSFDSATDFLTHHENHIRMDDPQGSGDNRRSSTSFESPLKDWNDFEAEVHANESRISRQKYSCALCGQEFPTRTELGEHRNLHLKVKIYSCVICRSMFSSAGALEVHMKDHGIEDPAEQSAHTSYIEYEGTEDTKDFNLTEGSRGSEADDEETTCKICQKRFSSLANLRRHTANVHRNSKRRRKCVECNKVFTKKNSYEYHVRMEHKGLSPPIKCSVCPQTFISRTNLNLHYETVHAHVAKAPYECDICGRQFKEDLSCKIHRGWHARRSRRLTEDLAAVNRNSTLMSSRSLENFDNPIELTQRPARARKSFPNSPPAKPAPQLQCQVCDNKFSDVTELRKHLWDVHCARNKSEKDYTTSDLQCELCTHILPDRPSLERHLEWHMENPILSDTKNGLQRKRYFSPTDLRTHPCDVCGNFYTSRKSLLRHKKLHKVSTAATVKFQSLAKKPSITQFPCNVCHKTFGSSMKLRKHKLRHFVNPAERKKRSVLEKSDFKCELCLKYYISEVGLRFHVEKTCPFREQETYSPRLKRRRIASTEESAPSAEVDPPKHLSVKSNVGLPVAWRMKKMVNCSICHKSFLGKSLFYKHRQIAHPKEITSRAEVLSVKKQSLAATAATDVTKNFRCNICGKTFPAALNLKLHRSAVHKHASLKNTCAICNLKFNSGVGLKNHMQKHSTDTFSCNICTRIFRSRPAVFIHLNRQHPEEYDLMQDNKSKLFTEIQGIPEQPLEPDVTVPFKCGLCNKTFETKKGLKVHSVKLHSVRHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01048377;
- 90% Identity
- iTF_01048377;
- 80% Identity
- -