Basic Information

Gene Symbol
-
Assembly
GCA_021155775.2
Location
CM037740.1:28714438-28728628[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 1.6e-05 0.0024 19.1 1.0 1 23 223 245 223 245 0.98
2 30 0.0025 0.38 12.2 1.3 1 23 268 291 268 291 0.96
3 30 0.0016 0.25 12.8 0.6 2 23 298 320 297 320 0.94
4 30 0.00033 0.05 15.0 0.5 1 21 340 360 340 361 0.95
5 30 0.00046 0.069 14.5 0.2 2 23 458 479 457 479 0.96
6 30 0.041 6.2 8.4 0.2 2 23 486 508 485 508 0.85
7 30 0.00013 0.02 16.2 0.1 1 23 577 600 577 600 0.96
8 30 0.011 1.7 10.2 0.7 1 23 606 629 606 629 0.96
9 30 0.13 20 6.8 1.5 1 23 642 664 642 664 0.97
10 30 8.6e-06 0.0013 19.9 0.9 3 23 709 730 707 730 0.96
11 30 0.032 4.8 8.7 1.1 2 23 794 817 793 817 0.93
12 30 3.4 5.2e+02 2.3 0.0 2 23 826 848 826 848 0.84
13 30 0.12 18 6.9 0.0 2 23 855 877 854 877 0.93
14 30 1.4e-05 0.0022 19.2 1.2 1 23 885 907 885 907 0.98
15 30 1.6 2.4e+02 3.3 1.6 2 23 939 962 938 962 0.91
16 30 0.00028 0.041 15.2 1.6 1 23 965 988 965 988 0.97
17 30 0.00032 0.049 15.0 0.6 2 23 995 1017 994 1017 0.95
18 30 0.0036 0.54 11.7 5.1 1 21 1044 1064 1044 1065 0.95
19 30 0.003 0.45 11.9 1.8 2 23 1079 1100 1078 1101 0.93
20 30 0.79 1.2e+02 4.3 2.0 1 23 1104 1126 1104 1127 0.95
21 30 0.06 9.1 7.8 3.1 2 23 1134 1157 1133 1157 0.93
22 30 1.1 1.6e+02 3.9 0.2 2 23 1165 1187 1165 1187 0.95
23 30 3.1 4.7e+02 2.5 0.0 2 23 1194 1216 1193 1216 0.88
24 30 0.18 27 6.4 3.1 2 23 1225 1247 1225 1247 0.96
25 30 0.21 32 6.1 0.2 2 23 1253 1275 1253 1275 0.93
26 30 0.00014 0.021 16.1 2.0 1 21 1388 1408 1388 1409 0.95
27 30 0.55 83 4.8 1.3 2 23 1509 1531 1508 1531 0.93
28 30 6.3 9.5e+02 1.5 0.4 2 23 1538 1560 1537 1560 0.91
29 30 0.1 16 7.1 1.5 1 23 1571 1593 1571 1593 0.97
30 30 0.06 9 7.8 0.1 3 20 1602 1619 1602 1621 0.95

Sequence Information

Coding Sequence
atggAGTCCAAGGAAGGCTACGCTGACCTCTGCAGGCTCTGCGCCTCCTACGACGCCATAAAAATGGACATTTTTGGTAAAGAGGGACGGAGTCGACAGCTTGTCGACAAAATTCAGACCTGCCTTCCCTTCAAGatTGCAGAAAACGACAGGCTACCGAAATGTCTTTGCTATCGGTGCATGtataatttggaaaatttttacgacttCAGAACAGCATGCGTTAACGCAGTGGCCCTACTTGAGAGATATCTGCCGCCCCATCACGGTGATATCGGGGATGGAACACAAAACCACGGCCATCAGTTTAATCAGCTGCATTCAGAACTCCttaaggaaaaagaaaatatgccAATACTCATTCCAGAAGCCCCCATAGTAAACCCCAACGGTGCTTTAGGAACTCCACCAAGGTTGAATTCGGATGGAGAAGCAGATCATGAAATTGAAGAGATCCTCGATCACGGTGTCAGTGATGATGGTGCAGATGATCACGATGACCAAAAATCAGAAGAATATGAAATGGATATGGAAACAAACCCAAGTGACTTTTTGGAACTGACGTCCATGGTGACTGAAGATGTGGATGAAGGTGACCCTCTCAATCTTCCAGGGGCTAGTAATGGATCTGGTATATTTCAACATACTTCAGAACAACACGAAGTTTATGTCTGCTCTTTATGTAACAAAGCGTTTAGTTCGAAAGGACACTTGTCACTGCATGCTAAAATTCATGCTGGAGCAGGTGATATTGTTGGAGAAAAGGTCATCACTGAtgatcatacatcgtacaaaAGGCCGTTTCAATGTGATTTATGCAACAAATCATACTCCACTGCGAAACATAGGTGGGGTCATGTATCTACTGCCCACAGAGGACATCCAGCAGTGACGTGCAGGTACTGTTCACGGATTTATTCGACAAGAACAAATTTGGAAGAGCATGTAAAGGCGCGGCACTCAGGTTTACCGCCACCTCCTGCGTTGCCGCTGCCCTATGTTCAACaagataataaatttcagtGCAAAACATGTCCAAAAATGTACACAAATGTGACAGATTTGAACAAGCACAGTCGGGTATGCGCTGGggaacgaaagaaagaaacttcCAACAAGATTTCTATGCAAAAAATTACTAAGACTGTTATTGACACATCTGATTTGTCAAGTTTAGACTCTGACGATGAAGGTAAAGATTATAGGGATGCAAAAGCAAAACTGGCAAAAAATCCCCAATTAACAATTCTTAAACAAGCCTTGACAAAGAAGGAGAATTTCAAACGAGATTATGACGAACGAAGAACAAAGCAAAAACCGAAGCAAATATGTAGAACAGATAGCAGTGAGACAGATGGACAGAAGAGGTGGTATTGTGAGACTTGTCCGCAGAGCTTTACGTCTGTGGATAGTCTCAAAGAACATGAACTCACTCACGATGCTGACAAACCTTTTATTTGTATCCTGTGcgaaaaagatttttcattgaaGTCGTCACTAAGTAGGCACATTGTGGCATCTCATGGCGTCGATCCGGGTCCAATAATTGATAGTGATAAATGTCTGAAAAGATCTGCAGCTTTGCAGATATccaaaaaaccaaaagaaACAGTAACCCATGACCACAGCAGGGATATTTCGGAGTCCTCGATGTCCCCTCAGGGTAACCTTGATAATGAATCAGAACATGAAAGCAGTCCGGAGAAcatgattgaaattgaaactgTTTTCGTCTGTGAAATCTGTACTCGCGATTTCAATGATCGTGCTTCACTGTGGTTGCATATTCGAGCAACTCATAAAGAACATGCAGCATTTGCATGCGGCgtgtgtttgaaaatttgctcTGATAATACTCAGCTGCTGAATCACGTCAATATGTACCATGGAGGGTCTAAGTTACACGTTTCGGAACAGCGAAGGTATAGTTGTACAATTTGCGGCAGGCAACAtgattcaagaaaaaaattaataacacaTGTCTCCATACACAATATTGACTCTGGCTATGACCCAGCCGGTTTTGTTCAGCTCAATAGTAATTActataatgaaaatttcaacggtAACGAAGCAAATGATCAGACATTAGAGTTTGATGGTGACGAAGGTGAAAGAATGgattgttatatttgtaacAAGTCATTTCCTAGTGAAGATCATCTTATACGCCATCAAAGAAATGCTCACAAGTCTGAACCACTGGCACCAATCGGAGATTCTGCTGGCAATGGAAGCGGAACTGGTTCTGTGAGTGGTAATGGAAATCGAGCACagtatcatttatttttcgtatgTGAATTATGTGGTAGTTCTCACCCAAGCAAATGGGAACGCTGGCTTCATGTCAGTAGTATTCACAGCAATGAGCCTGCTATTAGATGTGAACGGGACACCTGTggcaaaattttcgcaactaGATCATTGCGCAATGAACATGTCCAACATCATTCTGCTCAAGGCGCATCCCCGAATACCTGTGAAATATGTGGAAAACTTTGGGGTAGCCGAGTTGATTATTGGAAACATGTGATGGGCGTTCATTCAGATACCGTGCCTTTAATTTGTGGAGTTTGCCTGAAGGTTTTCCCTGACGTAATTCAACTAAGTGCCCATGTAAAAGCCAAGCATTGGCCTCTTACAAATGGAGATTTTAGTTGCGATATTTGTGGTAGACCATATTCGAACAAGTCGAAAATGTCCAGACACAGAAAAATTCATGGGCTGGATGTAGATAGTTATATAAATAGCAGTGTTCTCGAGTCAATTACCGACGCCGCCAGGATTGATTACAGCATTCCTGATCCAAATTTGAGCTGTGAAATGTGttctaatttgaaatttgcagATTTAAAAGAATTATGTACTCACAGACGAAATATTCACGGCTTGTTCCCGTGTGACTTATGTAACAAATTTTACGGACGGACGTCTCACTTATGGAAACACGTTAATCGCGTGCATAAAGGACATGAGGATGTAACGTGCAAGTACTGTTCAAAGACAAGTGCTTCGAAGGAACATTTAGCTGCCCATATTGCAAAAATTCACAGGTATGAACCAGACactaaaaaagaaacacgGGAATCGATGAGTGTCAAATCACCAAATCCAGATGACGAAACTCCTCATCATTGCGAAAAATGTAACAAAGGTTTTCACAAACGGTATCTATTACGTCGTCATATGAAAGGCTGTCAGAACTACCGAAAAGATCCTGGGGCATTGCTAACTCGCTGTAGAGCTTGTGAAAGGATATTCAAGGATCGTGCCAGTTTGCAAAAGCACATAGAAAACCATCATAGTACGTATATGTGTCACCTCTGCAATGAAGAAGTAACATCAAAGTTAGGTATTATGACTCACAACAGAGTTCATCATATGAACCATCCTGAATTGACTTGCGATCATACCAACTGCAAGAAATTATTCAGAACCAGGGAAGATCTGGAATCTCATAAAAAAGATCACAAATATCACAATACACCAAATGTCTGTGATTTTTGTGGTGACACCGTGGAAAATAAgctcaaattgaaaatgcacATTTTATCTCTACATAGAAATGAAATCGGTGTTTCTTGTGGAGTTTGTTTGATTCCAATGAAGGATCCCAAGGAATTGAAGAGACATGTAGAGGCCGTTCATAATCATATTTTATCAAAGCCAAATACCTGCAAGGTATGCGGCAAACAGTATGCTTCCAAGTGGAAAGCTTTCGATCATACAAAAAAGTGTCACGGAAAAGTATTCCGGACTTGTAAACAATGTCTTGCTGTCTTCACCAAAGATGAGGCGCTGAGAAACCATTATGCTAATGTTCACAATGTTCCAAAAGACCAGTTATCTGGGTTCAATTATCGATTAGAGACGTTGAGTGGCAAGCCAGACGACTACGAACCAGCAAACTTACTTGTTAAAGAAGAACCGGAAGATTTAGACTTTGAAGAAGATGCATGCGATGAAGATTCTAGCGAGCTGAAAAGAAAGAGACCTTTAAGTGACACGTTTGATTGCGATCTATGCCAcgagatatttttaaatgatgAAACATTGACCCAACATTGCCAAAATGTCCATAATACGAATCCTCTTAGGATgtcgaaaaaatcgaaaacagaTTATGTAAGTgctaaaagaaaaatgagggagagagaaaactTTGAATGCAAAAATTGCGGAAAGCAGTTCTGCACAAAAACTTTGTTTTGGAACCATATCAACGTTTGCACAAAACGTAATAGTGTAAACAAAGATAGTAACAATAGTTTTCAAACCTCAATTCTTGAAGCgcatttgaaaaacaataatcaaataaaaaacgaagagCCTGACCCTATTCTAAACgaatcaaatttgaatataccagacttcaatttatttgaggACATAAACATGCAACTTTCAGCTCAAAAACCTATTCCGGATCTAATGCCTATATCCTCAGTCAAAGGAAATTCCAACAGTAAGTACCCACGTAAAGATTCTAGAAAAGTTTACGATGAATCAACAAATACGGAGTGCGCATGTGAAGTTTGTGGAAAACAGTGGCCAGCGAAGAAACATCTATGGCAACATCTGATTCGTTTTCACAGAGTCGAAGCAGCCGTTACCTGTGGTGTCTGCTTGAAACTTTGTCAGACTTATGAGGAATTAGCAAATCACTTGACAGCAACACATGCAGCGATTCTGACTGGCGAAGGAAACAACTTTACATGTAAAATATGTGGGAGATATCACAATGCAAGAAGTAAATTATGGTTGCACATGAGTATTCATATAAATTATCATGGTATTGAGTGGTGTCAGGATTGCCAACAAGGATTCGAGGACAGAGAAAAATTGACTGAGCACTTGGAAAATTGCAcaggaaaacaaattgaatttgatgATCATAGTAATGACATAGATGCAAgtgtacaaaatgaaaatgataatgaaGAGAAGGGCAGTTTGATAGATGAAGATAATTCATTGATGGAAGAAACAGAAGAGTTAGAATTTGAGTCTGAGGCAGAAGATCATGTAACAGAAAATCACGAGGACAGTAACAGTGATGTTTCACACAGTGATGCTGGTACTGGCAATACAAGCGACGAGGAAGAAGACGACATTGACAATGAAGAGGACGTAGATGATGGCGAGGAAGCAAACGAAATAGATGACGAATCTGGAACACAGAGTAGAATCACGGGAGATCTCAGTAGTGATTCACACAGCGAAGACGAGGATTCTGAGCATAGCAATAatgatttaaatgaaaaagaaactaacGATGTAAGTGTTCTAAGTGACAGCAATGAGACAAACATCATGGACACTGAAGATTATGGTGAAGATAAACTCCAGGAACaaggaaaaattgttgatgTAATTAAAAgtccaaaaattgaaaatgagaatgaaaagGAAGATCACGATTCTCGAAACGTCGAAGTGAAATTGCAATTACACAATGTTTATGAAAGAGAATTTGAAGAAAGACCTTGCGAACTACAAAATCAAGCACTTTTAAAAGAAGAGCCTGGAGATTATTTAGACGATGAGGGTCCGCCTATTTTAAGTCCAATGGTACCATTACCTGTGAAGACTAATATGGAAGATGAGGAAACCAATCAGTTTGATACAGTGCAGTATAAGTTGAGTCCAATAGCAGTGACAGCTCCAAGTTCTGAGAGCCTGACAATGGTGAGTGAACTAGACCAAATTAGagatgaaatagaaaaaagtgaATCCTCATGGCCAGGTGCTTATTCGATAAAAGTCGAAGATGATGCAAGCACAATGGAAAATACGAATATATCTACGAATAATTTGACAGAAATTTTGGGATTAAACTCTGATAATGATCAAGAAAGTACGGAACTCCAAGATGTAGGTGCAAAGGTCGAGAGTGAAGCTTCTGAAAATGAGGAGGCTTCTGGAAACGAAGAGGTCACCTTGAATGACATAGACGACAGATCAGATCGTGAAAACCATAATGAAGAAACAGTAGAACATAGTGATGAGCATCAGGAAGATAATTTGGCAGAAATTTCAAGTGTAGTTGACATTACAGAGGATGTATTTGATGAAAACTCGAACGAGGAAAGTGATGATATGGAAGTAGTAGATAATGAAGACACTGTGCAAATACCTAATTTAGATGGAACTGTACTTATGGTCGCCAATGATGCTGATGGTAATCAGATTCTAATACAGCGTAATGTTTCTGATTTGCCCAACGAAGATTCGAATCCCGAAGTGACAGAGTACATTTTACAAGAAGATAACGAATATGAAATAGATAACTATGATGTGACTTTAAACGAGGAGGATGAAATGCAACAGTCTGACGACAGTTCCGAGGTCTCTGAAGAAGTGAAGAATATTGAGTGTGAAGAGAATAGTATagaaactgaaaataatacaGAAGCAGTAGAAGACGATCAGATATCTATCATCAGTGCCAAAAGAGAAGAAGTGTCAAGGACGTAA
Protein Sequence
MESKEGYADLCRLCASYDAIKMDIFGKEGRSRQLVDKIQTCLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERYLPPHHGDIGDGTQNHGHQFNQLHSELLKEKENMPILIPEAPIVNPNGALGTPPRLNSDGEADHEIEEILDHGVSDDGADDHDDQKSEEYEMDMETNPSDFLELTSMVTEDVDEGDPLNLPGASNGSGIFQHTSEQHEVYVCSLCNKAFSSKGHLSLHAKIHAGAGDIVGEKVITDDHTSYKRPFQCDLCNKSYSTAKHRWGHVSTAHRGHPAVTCRYCSRIYSTRTNLEEHVKARHSGLPPPPALPLPYVQQDNKFQCKTCPKMYTNVTDLNKHSRVCAGERKKETSNKISMQKITKTVIDTSDLSSLDSDDEGKDYRDAKAKLAKNPQLTILKQALTKKENFKRDYDERRTKQKPKQICRTDSSETDGQKRWYCETCPQSFTSVDSLKEHELTHDADKPFICILCEKDFSLKSSLSRHIVASHGVDPGPIIDSDKCLKRSAALQISKKPKETVTHDHSRDISESSMSPQGNLDNESEHESSPENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEHAAFACGVCLKICSDNTQLLNHVNMYHGGSKLHVSEQRRYSCTICGRQHDSRKKLITHVSIHNIDSGYDPAGFVQLNSNYYNENFNGNEANDQTLEFDGDEGERMDCYICNKSFPSEDHLIRHQRNAHKSEPLAPIGDSAGNGSGTGSVSGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSSIHSNEPAIRCERDTCGKIFATRSLRNEHVQHHSAQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSAHVKAKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDVDSYINSSVLESITDAARIDYSIPDPNLSCEMCSNLKFADLKELCTHRRNIHGLFPCDLCNKFYGRTSHLWKHVNRVHKGHEDVTCKYCSKTSASKEHLAAHIAKIHRYEPDTKKETRESMSVKSPNPDDETPHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYMCHLCNEEVTSKLGIMTHNRVHHMNHPELTCDHTNCKKLFRTREDLESHKKDHKYHNTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEAVHNHILSKPNTCKVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTKDEALRNHYANVHNVPKDQLSGFNYRLETLSGKPDDYEPANLLVKEEPEDLDFEEDACDEDSSELKRKRPLSDTFDCDLCHEIFLNDETLTQHCQNVHNTNPLRMSKKSKTDYVSAKRKMRERENFECKNCGKQFCTKTLFWNHINVCTKRNSVNKDSNNSFQTSILEAHLKNNNQIKNEEPDPILNESNLNIPDFNLFEDINMQLSAQKPIPDLMPISSVKGNSNSKYPRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRVEAAVTCGVCLKLCQTYEELANHLTATHAAILTGEGNNFTCKICGRYHNARSKLWLHMSIHINYHGIEWCQDCQQGFEDREKLTEHLENCTGKQIEFDDHSNDIDASVQNENDNEEKGSLIDEDNSLMEETEELEFESEAEDHVTENHEDSNSDVSHSDAGTGNTSDEEEDDIDNEEDVDDGEEANEIDDESGTQSRITGDLSSDSHSEDEDSEHSNNDLNEKETNDVSVLSDSNETNIMDTEDYGEDKLQEQGKIVDVIKSPKIENENEKEDHDSRNVEVKLQLHNVYEREFEERPCELQNQALLKEEPGDYLDDEGPPILSPMVPLPVKTNMEDEETNQFDTVQYKLSPIAVTAPSSESLTMVSELDQIRDEIEKSESSWPGAYSIKVEDDASTMENTNISTNNLTEILGLNSDNDQESTELQDVGAKVESEASENEEASGNEEVTLNDIDDRSDRENHNEETVEHSDEHQEDNLAEISSVVDITEDVFDENSNEESDDMEVVDNEDTVQIPNLDGTVLMVANDADGNQILIQRNVSDLPNEDSNPEVTEYILQEDNEYEIDNYDVTLNEEDEMQQSDDSSEVSEEVKNIECEENSIETENNTEAVEDDQISIISAKREEVSRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01048374;
90% Identity
iTF_01048374;
80% Identity
-