Basic Information

Insect: Neodiprion pinetum
Gene Symbol: Snai1
Assembly: GCA_021155775.2
Location: CM037746.1:23875891-23879210[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.7 1.3e+03 1.0 0.1 3 11 66 74 64 80 0.68

2 13 0.0015 0.23 12.9 0.2 1 23 259 281 259 281 0.95

3 13 2.5e-05 0.0038 18.5 1.2 1 23 289 311 289 311 0.98

4 13 5.7e-06 0.00086 20.5 0.2 2 23 319 340 318 340 0.97

5 13 1.9e-06 0.00029 22.0 0.8 1 23 346 368 346 368 0.99

6 13 6.9e-05 0.01 17.1 2.1 1 23 375 397 375 397 0.98

7 13 4.2e-06 0.00063 20.9 0.6 1 23 403 425 403 425 0.96

8 13 8.1e-06 0.0012 20.0 0.4 1 23 431 453 431 453 0.99

9 13 6e-07 9e-05 23.6 1.2 1 23 459 482 459 482 0.96

10 13 2.3e-06 0.00035 21.7 0.6 1 23 488 511 488 511 0.96

11 13 2e-06 0.0003 21.9 2.5 1 23 517 539 517 539 0.99

12 13 7.7e-05 0.012 16.9 0.4 1 23 545 567 545 567 0.94

13 13 0.00031 0.047 15.0 0.2 1 23 573 597 573 597 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.7	1.3e+03	1.0	0.1	3	11	66	74	64	80	0.68
2	13	0.0015	0.23	12.9	0.2	1	23	259	281	259	281	0.95
3	13	2.5e-05	0.0038	18.5	1.2	1	23	289	311	289	311	0.98
4	13	5.7e-06	0.00086	20.5	0.2	2	23	319	340	318	340	0.97
5	13	1.9e-06	0.00029	22.0	0.8	1	23	346	368	346	368	0.99
6	13	6.9e-05	0.01	17.1	2.1	1	23	375	397	375	397	0.98
7	13	4.2e-06	0.00063	20.9	0.6	1	23	403	425	403	425	0.96
8	13	8.1e-06	0.0012	20.0	0.4	1	23	431	453	431	453	0.99
9	13	6e-07	9e-05	23.6	1.2	1	23	459	482	459	482	0.96
10	13	2.3e-06	0.00035	21.7	0.6	1	23	488	511	488	511	0.96
11	13	2e-06	0.0003	21.9	2.5	1	23	517	539	517	539	0.99
12	13	7.7e-05	0.012	16.9	0.4	1	23	545	567	545	567	0.94
13	13	0.00031	0.047	15.0	0.2	1	23	573	597	573	597	0.94

Sequence Information

Coding Sequence: ATGATGACAGCTGACGGGGAAAAAGACTGTACGCATTGTTTGATATGCAACAGCAAAGTTGGAGTATCAACAAGAAACAGCGTACGAATATTTGGATCAACTTCGGTCGGGTCTACGGAGAAGCCTTTAGTGAATACGATATGTTCCGTACTCGATGTAGAATTAACCGAAGACACCGCGCATTCTCTTGTTATGTGTAAAAAGTGCTTCAAGTTATTTAACGAGATTGATGAACTAGAAGGCAGACTAGCTGAAGTAAAGTTGGAAATATTTACCAATTACAAGAGAACAATTGGGAAAGTGTCAAACATAATTTATCCAGAGGAAGAAGATTATAACGACCATGATTACCTTGAGAATCCTGAAACACAGAGCTCTGAGTCACCAGACAAGACCAAAGTCAAccagaaattgaagaagaaagacGTTAAGAAAATTGTCGACAATGACAGCACGATTAAAAACGATGAGACATCCAAAGATGACCTGGGGGATTTTGGAAGTGAGGATTTGGCGACCGATCAAGGTAGCGAGGTTGACCCTATAGCTATAAAGACTGAAAGTGAGGAGAACAGTGAGAATACAGAAGGACGAAAAGCCAGTTCGAAAAAAGGCAAAACCATCAACAAGTCTTCAGAGTCCGTTCAAGAGCCAatGGTGGTAAGAGTCGGTAGTGTTTACACGTGTTTACTGTGCACAAATGACGACGAACGAGGGACTGGTGACGCAAAATCAATCATGACGCATTTGAAAAATGCACACGACGCGCGATTGTACATCTGCGACATATGCAGCATGGAATTTCGGAAAAGGAACGAGCTTTCCGTTCACCTTGACGATCATGTAGCAAACGAGGAAGGAGACTTTCAGTGCGAAGTCTGCAATAGAATATTCAGCAATTTACGACTTTTCAGGATACACAAACGAATTCATTATCCTCAATCTAAATCTTGGCCATGTGAAACATGCGGAAAAAGATACagTTCGAGAAATTTACTCGAGGAGCACATCAACACTCACACTGGAGTTCGCCCTTATGTTTGTGAAACTTGTGGCAAAGATTTTGCCTCAAAATACACTTACAAGGCGCACGTAAAGACCCATGAAGTACGGCCAAGGCCTTTCGAGTGCAGTCAGTGTAGCAAGTCATTTTTGAGCCAGCAGAACCTCACTCAACACGAACGAACGCATAACGGAGTAAAGGAGTACGTCTGTCATCAATGCGGAAAAGCGTTCGGCTCACCGCATAATCTTGAGGTTCACAACATAGTTCACACTGGTTATAAGCCGTACACATGTAGAATATGTAATAAAGCCTTTGCTCGCAAGGCGGAGATAAGGGATCACGAGAGAACTCATACCGGGGAAAAACCGTACCAGTGTGAATTTTGTGGAGCAACGTTTAGtcaaAGGTCGAATCTGCAGTCTCACAAACGCGCAACACATTACAATGACAAAAGATACAAGTGTAACGATTGTGGGAAAGGATTTAAGCGGCGTAGGCTTTTGGATTATCATATCAAAGCAGCTCACACGGGTGAAAGACCATTCAAATGCCCAACTTGTACAGCGACGTTTGTTTATCCTGAACATTTTAAGAAGCATATGCGGATCCATACCGGTGAAAAACCCTATCTCTGTGAAGTATGTGGAAAAGCCTTTAACAGTAGGGACAACAGAAATGCGCACCGATTTATACACAGCGATAAAAAACCGTACGAATGTTTAGTGTGTGGGATGGGATTCATGAGAAAACCTTTGCTTTACACCCACATGCAGACACAGGGGCATTTAAACGATACGATTGTCGTGAATCAACCGCGATTAACAACAGACGACGACCAAGTTATTACTTTACCCGATGCTGATGTGGAACTATTGATGGAAGGCGATGACAATGAACAGGAGACAGAATTGTATATAACTGAATTGAAAGATCACGTGATCATACAAGACGGTGCTCAGATATACCAGGAAGAAAATGTTTTGAGCATTCCATCGGAAGAGAATATTACCGAAGAGGCAGTTGAGCATCTCGTCGTTGACGGGCAGATTGATTTTGCTGAAAGTGACGTAATGGGATGCAAAACCGAGGCAGCCGAACATATCGAGGAAGTTTACAGTTACAACGACGGCGAAGACGGCTCTACCATAGTTGTACCCACCACTTCGGAGTATGAGGAGATAGCGGaggataataaaaattccgTACGGTTGGTGCACATCAGAATCCCGGCTTCAGCGGCCGATGATGGTCGGAATTGGTTAAACCTAGTACAAAACACATGA
Protein Sequence: MMTADGEKDCTHCLICNSKVGVSTRNSVRIFGSTSVGSTEKPLVNTICSVLDVELTEDTAHSLVMCKKCFKLFNEIDELEGRLAEVKLEIFTNYKRTIGKVSNIIYPEEEDYNDHDYLENPETQSSESPDKTKVNQKLKKKDVKKIVDNDSTIKNDETSKDDLGDFGSEDLATDQGSEVDPIAIKTESEENSENTEGRKASSKKGKTINKSSESVQEPMVVRVGSVYTCLLCTNDDERGTGDAKSIMTHLKNAHDARLYICDICSMEFRKRNELSVHLDDHVANEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQSKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCETCGKDFASKYTYKAHVKTHEVRPRPFECSQCSKSFLSQQNLTQHERTHNGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYTCRICNKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCNDCGKGFKRRRLLDYHIKAAHTGERPFKCPTCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTDDDQVITLPDADVELLMEGDDNEQETELYITELKDHVIIQDGAQIYQEENVLSIPSEENITEEAVEHLVVDGQIDFAESDVMGCKTEAAEHIEEVYSYNDGEDGSTIVVPTTSEYEEIAEDNKNSVRLVHIRIPASAADDGRNWLNLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00175229;
90% Identity: iTF_01048373;
80% Identity: iTF_01048373;