Npin018255.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- bab2
- Assembly
- GCA_021155775.2
- Location
- CM037743.2:32943101-32945021[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-08 8.7e-05 23.0 0.0 1 39 282 320 282 326 0.91 2 2 1.7 3.5e+03 -1.3 0.0 33 42 323 332 321 334 0.85
Sequence Information
- Coding Sequence
- ATGGAATCCGGAAACAATTTACCTGATGTGGATAATTACCTTTGTGGTGATCATCAGCAATTTTGCGTGTCATGGACTTCCCACCAGTCTAACATGCATAATGCATTTCCAAAATTGTTGAGCTCCGAACAGTTTGTTGACGTCACGTTGGCCTGTGACGGCGGCTCTATAAAATGTCACAAGGTTGTACTATCTGCCTGTAGCGATTATCTAGAGCGACTGCTTCTGGATATTCCCTGCACTCatccaataatttttcttcgcgACATGAGAATGTGGGAACTTCAGGCGCTCGTTGAATTTATGTACCGTGGAGAGGTTTATGTCGCACAACAGCAATTGACAAAGCTGATGCAAGCTGCCGAAGCTTTACAGGTACGCGGTCTATCGAATCAAGGAAAAGACAACCCGGACCTGAATGCTGAATCCAGTTCCCAACAATCAAATAATCTTGAGACGCCAACAATTCCGacaaaacaaataacaatCGACAATATCAAAATTGAAGATACACCGATGATGGCTGCAAATAATGCCAATCTTCTCGAGTGCACCCCGACAATTGGATCTCTTCAAGTGACTCCTACTGCAGCACCCAGCGCAACTCAGAACTCTCAGAATTCTGTTAACATGGAACACACAGAGGCACTTCACCACTTGGAAAAAGCATTGAGTGCTTGCGAAGCAACTCTCACCGAGACTCCGGGACTGGTGAAGATGGAGCCGGATGAACAATTCAACCATGATCAGAAACCATACACTATTAGCATGGTCCGTGCTACTAACTGCACACCGGGCAGCCCGTTTCCAGCAATTGAAgGCTACCAAAGACGACAGCGCCGTTCCGAAGAAGAACTGAAACAAGCTTCCGACATGGTCGCACGTGGTATGACGTTCCAAGTTGCTTCAGAAAAATATAACATCCCAATTAGTACAATCCGTTTTTACATGGTACGCAAGGGAATCTTACAGAGGAGGAAACGTGGACGCGGATCCAATAGTCTTGGAATGAACAGTCAACCAGGTAGTCCTGCGAGCCCACCGTTTCACATGATGAACTACCGATTGCCGGAGAGTCTGAACACCAGTTTACCTTAG
- Protein Sequence
- MESGNNLPDVDNYLCGDHQQFCVSWTSHQSNMHNAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLDIPCTHPIIFLRDMRMWELQALVEFMYRGEVYVAQQQLTKLMQAAEALQVRGLSNQGKDNPDLNAESSSQQSNNLETPTIPTKQITIDNIKIEDTPMMAANNANLLECTPTIGSLQVTPTAAPSATQNSQNSVNMEHTEALHHLEKALSACEATLTETPGLVKMEPDEQFNHDQKPYTISMVRATNCTPGSPFPAIEGYQRRQRRSEEELKQASDMVARGMTFQVASEKYNIPISTIRFYMVRKGILQRRKRGRGSNSLGMNSQPGSPASPPFHMMNYRLPESLNTSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00939742;
- 90% Identity
- iTF_01049058;
- 80% Identity
- iTF_01049058;