Npin028471.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- -
- Assembly
- GCA_021155775.2
- Location
- CM037746.1:12990552-12991942[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8 1.7e+04 -3.5 0.3 35 44 3 12 3 12 0.83 2 2 1.1e-08 2.4e-05 24.8 0.0 5 40 18 55 17 58 0.82
Sequence Information
- Coding Sequence
- atgcCAAGACGTTACCAAAGAAAGACAGAGACTAAATATGAATTAGTGGACTTGGAGAAAGCCATTCAGACTACTGTCAGAAACAAAACACTTTCACTAGGAAAGGCAGCTATTACTTATTCTGTGTCAAAAAGCACTATACATGACTATCTTAAACAAGAAACTATTAAGACTCCAAAAACTGGAAGAAAGGCTATATTTTCTCAAGAACAAGAAGTAGAACTAGAGGATCATATTTTGAAATGCAGTAAACAGTTTTATGGTTTAACTGTTGAGGTGGTCCGCAAAATAGCCTTCAAATTTGCCGAAGTCAATAATTTGAAGcataattttgacaaaaaaaaacccaaatgGCAGAGAAATTCCAGGATACTAGATACAAAAAGCCAGAAGCAAGTCGGTATGATAACTAGTGGTGAAAGAGGAACTACAACAACAGTTGTTTGCGCATTCAGTCCCTCAGGGAATTATGTTCctccgtttttcatttttaagcGGAAAAAACAGAATGCTCAATTGTTGAGAGGAGGCGATTCTGATCTGATAGCAGCAGTTAGCGAGTTGGGTTGGATGAACGAAAACCACTTTGTAGATTGGTTACGTCATCTTATCTCATATGCAAAGCCATCTGTTGAACAACCAATTCTACTTGTTTTGGATAACCACGAAAGCCACGTTAGCCTTGCTTGCTATCTGCTTTGTCGCCAGAATGGAATAGTATTGTTATCTCTTCCACCGCATACGTCACATCGAATGAAACCTCTGGATTTAACATATTTTGAACCCCTCAAAACTGCATATAACCGCGAACGTGATTTATACATGGCTTCCAACGTAGGCCAAAGGATTACTCAGTATGAAGTCGTCGAACTTTTCACTAAAGCGTTCAATCGGTTCAGCAATATTGAGAAAGCAGCAAATGGATTCCGGGCAGCTGGTATTTGA
- Protein Sequence
- MPRRYQRKTETKYELVDLEKAIQTTVRNKTLSLGKAAITYSVSKSTIHDYLKQETIKTPKTGRKAIFSQEQEVELEDHILKCSKQFYGLTVEVVRKIAFKFAEVNNLKHNFDKKKPKWQRNSRILDTKSQKQVGMITSGERGTTTTVVCAFSPSGNYVPPFFIFKRKKQNAQLLRGGDSDLIAAVSELGWMNENHFVDWLRHLISYAKPSVEQPILLVLDNHESHVSLACYLLCRQNGIVLLSLPPHTSHRMKPLDLTYFEPLKTAYNRERDLYMASNVGQRITQYEVVELFTKAFNRFSNIEKAANGFRAAGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -