Npin026554.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- ttk
- Assembly
- GCA_021155775.2
- Location
- CM037745.1:29828158-29845787[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-12 4.3e-09 36.8 0.1 5 39 1 35 1 39 0.91 2 2 0.0017 3.5 8.3 0.0 17 41 559 583 551 586 0.79
Sequence Information
- Coding Sequence
- ATGCAGGCGGCGATTCAAGCGGTTCTTAACGGTTCGATGGGGTACAAAAGGGCTGCCACCCAATTTCACGTACCTCGAACAACCCTGGAACGCCACGCTAAGAAGACGCGAGATAGCCCAGAATCCGCGCTAAAGAAAACTACTCCCCCGGGATCCGGCAATCGTGTTTTCAACGAACAGCAGGAGGCCGAGCTTGTTCAACGTTTGAATAAAATGGCGGGTCAACTTTCCGGTCTCGAACTTAACGAGCTTCGCGATGTTGCTTTCCGATTGGCCCGGCGCAATAACCTCGCTCATCCGTTTGGCGAGGATGGAAAAGCGGGAATAGAATGGGTCAGAGGATTCATGGCTCGACTGCATCCTCATTTAGCCCTACGAAGACCCGACGAAGCTACATCGATGCCTCGCGCAATCGGCCTCAACAAGGAAAATAAATTGGTGGTTCGACAAAAGCTTGACGGTAAAGAAGACGGTAGTGCGAAATCTAACAGCAGCAATTACGGAGGAGATTCACTGTGGCTAAAAGGAGATTTGGAGGAGCTATTCGAGGCAGAGGATATTCAAGAAATCGACGAGTTCGAAGACTCGGACAGGTTCGAATTCGAACATCAAATAAGCGACTGGTCGTACCTTGACGAGGAAGGCGACGAGGGCACTGTGACTGGGGCAGAGGAAGGCGACGAGACGGTGAACTACGGAGGGAAGGGAGGAGAAGTGGTGCCCAGCTTGCGCATGCTGCAACAACGAGGCGGTTCAGCGTCAGCGTCAGCATCAGCATCCAACGGCAACATGTTCCCTCAACAATATTGTCTACGATGGAAATATCATCACAGCAACCTACAGACCATGTTCTCGCAGCTCCTAGAGCGGCAGGCTTACTGTGACGTGACGCTTGCGTGCGAGGGACAAACCCTGCGTGCACACAAGGTGGTGTTATCAGCTTGTAGCACATACTTTGACACTATACTATCAGAATATGCAGAAAGGGATCCTATTGTCATCATGCGCGACGTTAAGTTTGCCGATATTAAAGTTCTCGTTGACTTCATGTACAAAGGAGAGATAAACATCGACCATACAAGGTTATCATCTCTACTAAAGACTGCAGAAGATTTGCACATCAAGGGTCTGGCCGAGGTCAGCTGGCGCAGTGATTCGGTACAAAATGATATGAGCAACAGTGGTCACAGCCCAGGAGCAGCTACTCCAGGAGTAGAAACAGTTCTCAGGGAAGGTGACGCAGAGGAGTCTTCACCACCTAAACAACGACGCCGAGGACGTCCACCTCTCGACGATCCCCCATCTGCACACGATGTTTTTACACCAAAGGTCACCTGCGTTACTGGCAATATTGGCTCGGATGATACCTTCAATGTAACACAGGAAGAAATGATGAGCGAAGGAGACCACGAGAGTTGGGATGGTGATATGGTGCTGTCTGAAAATAACGAAACCCCATTACCAGTGTTATCTTACATGTCTAAAGATGATTCCGCCGCTCCGGACGATAAGAAACCATCCGTGACATCTAATTCCAATGCTCCTAACCCAGCAATTCCAGAGCAATTCCGAGATGTGGTAAAGATGAATGACTATTTGACAACCGGACGTCGCCAAGAATTTTGGGAGGAACCATTCACACGACGTGTCATGGATGCTATTAAAAGCAAGGAATTGGAAATGAAAACGGCAGCTGAAATTCTCGGTGTCTCTTATGGAACTCTATACGGTAGATACCGTGACAGCTACGGTTGCCTTAAACACCCATACAGagtgAGAGATTTCTGGGCAGAACCGGGCCCTGCCGAAGTGTTGGCCAAATTACGAAGGAAGGAAATAACCTTATTTCGTGCTGCTGAATACCTCAATGTAACTGTACAAACACTTGCCACATACTTATCTACATTGCAAGGACCAGACAGGCTGTCTCTTTCAGGAGAACTAGCTGGGCCCATATCAGCGATTGACGGTGGCAGTGAAACAGAAAATGATGCCGTTAATGATATTCTTCAGAAAATAAATGCCAACGTCGCTTCGGTCGTTCCAAACATTTCTACAGCAACTCCTATAAAACGGGAAGGGGGTGGATTCGTGGACGTTCCAACACCAATTACTAAAGCAGCAACTTCGGTTCTTGAAAATAATCCTGATATAACTATAGTTAAAACGGAAAGTATGCCTCGCAAGCGGGAATACTCGAAAGTTCCAAATTCAGAGAATAACAATGCTAAATTAATGAGTGGTGGCGGTGTAAGCGAACTGTCGCAACAGAAGCTCTCCGATTCGCTATCTTTGAACAGTGACAACATCAAACCCTAA
- Protein Sequence
- MQAAIQAVLNGSMGYKRAATQFHVPRTTLERHAKKTRDSPESALKKTTPPGSGNRVFNEQQEAELVQRLNKMAGQLSGLELNELRDVAFRLARRNNLAHPFGEDGKAGIEWVRGFMARLHPHLALRRPDEATSMPRAIGLNKENKLVVRQKLDGKEDGSAKSNSSNYGGDSLWLKGDLEELFEAEDIQEIDEFEDSDRFEFEHQISDWSYLDEEGDEGTVTGAEEGDETVNYGGKGGEVVPSLRMLQQRGGSASASASASNGNMFPQQYCLRWKYHHSNLQTMFSQLLERQAYCDVTLACEGQTLRAHKVVLSACSTYFDTILSEYAERDPIVIMRDVKFADIKVLVDFMYKGEINIDHTRLSSLLKTAEDLHIKGLAEVSWRSDSVQNDMSNSGHSPGAATPGVETVLREGDAEESSPPKQRRRGRPPLDDPPSAHDVFTPKVTCVTGNIGSDDTFNVTQEEMMSEGDHESWDGDMVLSENNETPLPVLSYMSKDDSAAPDDKKPSVTSNSNAPNPAIPEQFRDVVKMNDYLTTGRRQEFWEEPFTRRVMDAIKSKELEMKTAAEILGVSYGTLYGRYRDSYGCLKHPYRVRDFWAEPGPAEVLAKLRRKEITLFRAAEYLNVTVQTLATYLSTLQGPDRLSLSGELAGPISAIDGGSETENDAVNDILQKINANVASVVPNISTATPIKREGGGFVDVPTPITKAATSVLENNPDITIVKTESMPRKREYSKVPNSENNNAKLMSGGGVSELSQQKLSDSLSLNSDNIKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01412454;
- 90% Identity
- iTF_01049046; iTF_01048328;
- 80% Identity
- iTF_01049046;