Npin030194.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- retn
- Assembly
- GCA_021155775.2
- Location
- CM037746.1:26914358-26924440[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.7e-20 2.1e-16 60.9 0.0 16 89 106 177 99 177 0.93
Sequence Information
- Coding Sequence
- ATGCGCTCTCTCAATGGCGGTCCGCCGCGGAGCCGCGCGCCTCCGCGATCTCCGCTCTCTCTATACCACTTACCGACGGACCTTATCACCAAGCCCTACGCGCGACACGCCGCGCGGCGCGAACCTATAAACTCCATCGATTCCCCCAAACCCGGCGGAGCTCATGATCCTATTTTCCTTAGGGTCTTGGCGTACGCTGTCGTCGTCGCGTACTATAACGGCGCACGGAACTCTGTTTCGAGTAGCTCGCTGCGGCTCCCGTATAACTTGGTGCATACGAAATATCCTACAAGAGCGGACTTTTTTCTCCCTGTTTCAGGAACACCGATCAATCGGTTACCCATCATGGCCAAGTCCGTTCTCGATCTCTACGAATTGTACAACCTGGTTATAGCCAGGGGTGGCCTGGTCGACgttatcaataaaaaattatggcaGGAAATCATCAAAGGACTTCATCTTCCGTCCAGCATCACGTCGGCAGCCTTCACCTTGCGCACACAGTACATGAAGTATCTCTACCCCTACGAGTGCGAAAAGAGGCGGCTGTCAACCCCAACTGAGCTCCAGGCGGCGATCGACGGTAACCGGAGAGAAGGCCGAAGGAGCAGCTACGGGGCGTACGCGGGTGCCGGCGGACCCGGGGAATCGATGGTGCGGGCGAGTACGCATACCCCTAGCTCGTTGTCCCTGCACGCCCAAATGTCACCATTGTCCCTGGTTACGGCCGTGGCGGCCGGTGGTCAGCACCACGTGCCCCAGTCTCTGGTGAACGGAACTGGCGCCCACGCGACGATGACCCATCATCCCCATCATCCGCAACATCCGCAAGGGCCGCTTGGTCAGCCCCTCAACGCCGGACCAATGCCGGGAACGTCGGATTTCGAGGCTCGCATGGTCGAGTACGTAAAACTCTTGCAGAAGGAGCTGCACAACCCCGGTACCGGAACACCACCTCCGATGATTCACAGACAAGGAAGCGCCTCGCCACCCCCATCCCCGTCGACCCGTGAGGCTGCTCTGAACGCCCTGGAGTTGTCTCGAATGACCTTGTGGAACATTTACAACAACAACTCCCTATATCCGGGGGTTAGTCACCAGCAGTCTCACTCGCCGCCAGCTAGACATTCCCCTGTCCCGCCAGCCGCCAGTCCCGAACCGCAGAGGGAAGCTCTTGACCTGGGCCTGAGATCCTCGCCGATATCTTCACCCGCGGTAAGAAGCAGTCCTCCGGAATCCAGTGGCACGCCGGTACCGGCGAAAAGAGACCACGACGTCGAAGGGATGCTGTTAGGGGCACCGCCGGCCAAGCGATTAATGACCGAAGAAGATGCCTGTGCTTCCGACAAGGCGGTCTCCACGGGACTCGTAGGGGCACATATTAAAATTGACAATAGAGGAGACGGACGCAGCGGTGAAAATTCGTTGGTGGTCAGCATGGAGTTGAACGGGGTAATGTATCAGGGTGTTCTTTTCGCCCAAACCGACAACACGACGCCCGGAGCTACCGCAGCAAACAAGACTAAAGACACGAAACTTACGACATTTTAA
- Protein Sequence
- MRSLNGGPPRSRAPPRSPLSLYHLPTDLITKPYARHAARREPINSIDSPKPGGAHDPIFLRVLAYAVVVAYYNGARNSVSSSSLRLPYNLVHTKYPTRADFFLPVSGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPTELQAAIDGNRREGRRSSYGAYAGAGGPGESMVRASTHTPSSLSLHAQMSPLSLVTAVAAGGQHHVPQSLVNGTGAHATMTHHPHHPQHPQGPLGQPLNAGPMPGTSDFEARMVEYVKLLQKELHNPGTGTPPPMIHRQGSASPPPSPSTREAALNALELSRMTLWNIYNNNSLYPGVSHQQSHSPPARHSPVPPAASPEPQREALDLGLRSSPISSPAVRSSPPESSGTPVPAKRDHDVEGMLLGAPPAKRLMTEEDACASDKAVSTGLVGAHIKIDNRGDGRSGENSLVVSMELNGVMYQGVLFAQTDNTTPGATAANKTKDTKLTTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -